RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 GATA6Q92908 595 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 FAM81BQ96LP2 452 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 SCNM1Q9BWG6 230 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 TMEM121BQ9BXQ6 578 aaPredicted RBP14.19□□□□□ -0.14
TRIM28-211ENST00000597968 TMEM245Q9H330 911 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 SUN2Q9UH99 717 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 SCML1Q9UN30 329 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.19□□□□□ -0.145e-7■■□□□ 12.4
TRIM28-211ENST00000597968 PCDH15Q96QU1 1955 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 FRYQ5TBA9 3013 aa14.19□□□□□ -0.14
TRIM28-211ENST00000597968 TYW5A2RUC4 315 aaKnown RBP14.18□□□□□ -0.14
TRIM28-211ENST00000597968 TULP2O00295 520 aa14.18□□□□□ -0.14
TRIM28-211ENST00000597968 CER1O95813 267 aa14.18□□□□□ -0.14
TRIM28-211ENST00000597968 DLDP09622 509 aaKnown RBP14.18□□□□□ -0.14
TRIM28-211ENST00000597968 RPL34P49207 117 aaKnown RBP14.18□□□□□ -0.14
TRIM28-211ENST00000597968 MARSP56192 900 aaKnown RBP14.18□□□□□ -0.14
TRIM28-211ENST00000597968 SIM1P81133 766 aaPredicted RBP14.18□□□□□ -0.14
TRIM28-211ENST00000597968 TMEM215Q68D42 235 aa14.18□□□□□ -0.14
TRIM28-211ENST00000597968 GLRX5Q86SX6 157 aa14.18□□□□□ -0.14
TRIM28-211ENST00000597968 DEFB119Q8N690 84 aa14.18□□□□□ -0.14
TRIM28-211ENST00000597968 STK32AQ8WU08 396 aa14.18□□□□□ -0.14
TRIM28-211ENST00000597968 SERPINB11Q96P15 392 aa14.18□□□□□ -0.14
TRIM28-211ENST00000597968 GPR174Q9BXC1 333 aa14.18□□□□□ -0.14
TRIM28-211ENST00000597968 PCDHGB2Q9Y5G2 931 aa14.18□□□□□ -0.14
TRIM28-211ENST00000597968 MAP1BP46821 2468 aaKnown RBP14.18□□□□□ -0.14
TRIM28-211ENST00000597968 USP24Q9UPU5 2620 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 KCNJ18B7U540 433 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 BCAT2O15382 392 aaPredicted RBP14.17□□□□□ -0.14
TRIM28-211ENST00000597968 LTFP02788 710 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 ASLP04424 464 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 PABPC1P11940 636 aaKnown RBP14.17□□□□□ -0.14
TRIM28-211ENST00000597968 ACADSBP45954 432 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 GRIK2Q13002 908 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 ARID5BQ14865 1188 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 CCDC40Q4G0X9 1142 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 PIK3R6Q5UE93 754 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 DCAF12L1Q5VU92 463 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 DBX2Q6ZNG2 339 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 PPM1KQ8N3J5 372 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 LMO3Q8TAP4 145 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 UBA3Q8TBC4 463 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 SLC6A17Q9H1V8 727 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 SFMBT1Q9UHJ3 866 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 GGA2Q9UJY4 613 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 TPX2Q9ULW0 747 aaKnown RBP14.17□□□□□ -0.14
TRIM28-211ENST00000597968 CLEC4EQ9ULY5 219 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 CNTN6Q9UQ52 1028 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 PCDHB9Q9Y5E1 797 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 PCDHB4Q9Y5E5 795 aa14.17□□□□□ -0.14
TRIM28-211ENST00000597968 CEP192Q8TEP8 1941 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 TRIM49BA6NDI0 452 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 C1QTNF9BB2RNN3 333 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 FGFR1OPO95684 399 aaKnown RBP14.16□□□□□ -0.14
TRIM28-211ENST00000597968 C1QTNF9P0C862 333 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 LCP1P13796 627 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 PRKCSHP14314 528 aaPredicted RBP14.16□□□□□ -0.14
TRIM28-211ENST00000597968 POLR2EP19388 210 aaKnown RBP14.16□□□□□ -0.14
TRIM28-211ENST00000597968 PRKCHP24723 683 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 PI4KAP42356 2102 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 AFF3P51826 1226 aaKnown RBP14.16□□□□□ -0.14
TRIM28-211ENST00000597968 MTA1Q13330 715 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 TRIP6Q15654 476 aaKnown RBP14.16□□□□□ -0.14
TRIM28-211ENST00000597968 TTC31Q49AM3 519 aaPredicted RBP14.16□□□□□ -0.14
TRIM28-211ENST00000597968 TTI2Q6NXR4 508 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 PMF1Q6P1K2 205 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 CHST9Q7L1S5 443 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 ENOSF1Q7L5Y1 443 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 RAB44Q7Z6P3 723 aaPredicted RBP14.16□□□□□ -0.14
TRIM28-211ENST00000597968 ADIPOR2Q86V24 386 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 CCDC117Q8IWD4 279 aaPredicted RBP14.16□□□□□ -0.14
TRIM28-211ENST00000597968 HJURPQ8NCD3 748 aaPredicted RBP14.16□□□□□ -0.14
TRIM28-211ENST00000597968 C1orf216Q8TAB5 229 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 FIBINQ8TAL6 211 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 EDEM1Q92611 657 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 BTBD1Q9H0C5 482 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 LHX5Q9H2C1 402 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 SGK2Q9HBY8 427 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 ABCB8Q9NUT2 735 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 KIAA1522Q9P206 1035 aaPredicted RBP14.16□□□□□ -0.14
TRIM28-211ENST00000597968 TLR6Q9Y2C9 796 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 CEP295Q9C0D2 2601 aa14.16□□□□□ -0.14
TRIM28-211ENST00000597968 ASCC3Q8N3C0 2202 aaKnown RBP14.15□□□□□ -0.14
TRIM28-211ENST00000597968 M0QYV0 167 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 MED7O43513 233 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 ACSL4O60488 711 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 DNTTP04053 509 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 MATKP42679 507 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 TBX4P57082 545 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 SUZ12Q15022 739 aaKnown RBP14.15□□□□□ -0.14
TRIM28-211ENST00000597968 TEAD4Q15561 434 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 PTPRNQ16849 979 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 FNDC3BQ53EP0 1204 aaKnown RBP14.15□□□□□ -0.14
TRIM28-211ENST00000597968 MBLAC2Q68D91 279 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 ISM2Q6H9L7 571 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 USP30Q70CQ3 517 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 NAXDQ8IW45 347 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 TRIM59Q8IWR1 403 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 EHBP1Q8NDI1 1231 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 ADAMTS14Q8WXS8 1223 aa14.15□□□□□ -0.14
TRIM28-211ENST00000597968 TFAP2BQ92481 460 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms