RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 IFRD2Q12894 506 aaPredicted RBP9.85□□□□□ -0.83
TRIM28-208ENST00000597172 TAF10Q12962 218 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 CCDC14Q49A88 953 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 SYPL2Q5VXT5 272 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 NYAP1Q6ZVC0 841 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 RTL10Q7L3V2 364 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 ARCQ7LC44 396 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 SLFN11Q7Z7L1 901 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 MON1AQ86VX9 555 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 CPNE8Q86YQ8 564 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 ZNF687Q8N1G0 1237 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 ARFGAP1Q8N6T3 406 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 LRRC57Q8N9N7 239 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 HDAC7Q8WUI4 952 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 RXFP2Q8WXD0 754 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 PSMG2Q969U7 264 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 MYRFLQ96LU7 910 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 MCEEQ96PE7 176 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 SLC2A13Q96QE2 648 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 EDEM2Q9BV94 578 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 SELENOOQ9BVL4 669 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 LRRC3Q9BY71 257 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 FBXO44Q9H4M3 255 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 NMUR1Q9HB89 426 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 HEBP1Q9NRV9 189 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 VPS45Q9NRW7 570 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 OSER1Q9NX31 292 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 CDH7Q9ULB5 785 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 PCDHGA5Q9Y5G8 931 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 CAPN6Q9Y6Q1 641 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 SCINQ9Y6U3 715 aa9.85□□□□□ -0.83
TRIM28-208ENST00000597172 A0A1W2PQH9 124 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 SHISA7A6NL88 538 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 TK2O00142 265 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 FANCGO15287 622 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 MAP3K13O43283 966 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 ZNF500O60304 480 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-208ENST00000597172 PALMO75781 387 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 PAPLNO95428 1278 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 LTFP02788 710 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 CSH1P0DML2 217 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 CSH2P0DML3 217 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 PDGFRAP16234 1089 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 TFE3P19532 575 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-208ENST00000597172 NAP1L1P55209 391 aaKnown RBP9.84□□□□□ -0.83
TRIM28-208ENST00000597172 YWHAGP61981 247 aaKnown RBP eCLIP9.84□□□□□ -0.83
TRIM28-208ENST00000597172 PITX1P78337 314 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-208ENST00000597172 SCAPQ12770 1279 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 MESDQ14696 234 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 RAB6CQ53S08 254 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 PPM1LQ5SGD2 360 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 BSPRYQ5W0U4 402 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 TCEAL6Q6IPX3 200 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 DCUN1D2Q6PH85 259 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 TMEM150AQ86TG1 271 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 HS6ST3Q8IZP7 471 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 DEFB106AQ8N104 65 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 SLC39A7Q92504 469 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 TCEAL3Q969E4 200 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 FBXO32Q969P5 355 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 NT5C3BQ969T7 300 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 TRMT2BQ96GJ1 504 aaKnown RBP9.84□□□□□ -0.83
TRIM28-208ENST00000597172 CALR3Q96L12 384 aaKnown RBP9.84□□□□□ -0.83
TRIM28-208ENST00000597172 KXD1Q9BQD3 176 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 PRKD2Q9BZL6 878 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 RAB6CQ9H0N0 254 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 GOLPH3Q9H4A6 298 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 IL21Q9HBE4 155 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 POPDC2Q9HBU9 364 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 ZNF334Q9HCZ1 680 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-208ENST00000597172 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.84□□□□□ -0.832e-6■■□□□ 11.5
TRIM28-208ENST00000597172 GMIPQ9P107 970 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 CALCOCO1Q9P1Z2 691 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 ANAPC7Q9UJX3 599 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 MAGED2Q9UNF1 606 aaPredicted RBP9.84□□□□□ -0.83
TRIM28-208ENST00000597172 NAALADL1Q9UQQ1 740 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 HYOU1Q9Y4L1 999 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 ASB3Q9Y575 518 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 ALG6Q9Y672 507 aa9.84□□□□□ -0.83
TRIM28-208ENST00000597172 GOLGA4Q13439 2230 aaKnown RBP9.84□□□□□ -0.83
TRIM28-208ENST00000597172 FAM221BA6H8Z2 402 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 MYO1FO00160 1098 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 NRG2O14511 850 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-208ENST00000597172 DPYSL4O14531 572 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 CCL16O15467 120 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 SART1O43290 800 aaKnown RBP9.83□□□□□ -0.84
TRIM28-208ENST00000597172 HSF2BPO75031 334 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 TADA3O75528 432 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 DAB1O75553 588 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 PROSCO94903 275 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 ENDOD1O94919 500 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 LRG1P02750 347 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 F11P03951 625 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 GPD1P21695 349 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 MSNP26038 577 aaKnown RBP9.83□□□□□ -0.84
TRIM28-208ENST00000597172 NOS2P35228 1153 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 MPLP40238 635 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 MATKP42679 507 aa9.83□□□□□ -0.84
TRIM28-208ENST00000597172 ZNF143P52747 638 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-208ENST00000597172 PLD1Q13393 1074 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms