RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 ARSEP51690 589 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 YWHAGP61981 247 aaKnown RBP eCLIP13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 HTRA4P83105 476 aaPredicted RBP13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 MTM1Q13496 603 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 DPYSL3Q14195 570 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 LTBP2Q14767 1821 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 C6orf118Q5T5N4 469 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 VSTM1Q6UX27 236 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 CPLX4Q7Z7G2 160 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 NT5C3BQ969T7 300 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 C9orf72Q96LT7 481 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PRMT1Q99873 361 aaKnown RBP13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 CD248Q9HCU0 757 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 TBK1Q9UHD2 729 aa13.13□□□□□ -0.31
CDK5RAP3-217ENST00000580287 HAPLN1P10915 354 aaPredicted RBP13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 SCNN1AP37088 669 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 DSG1Q02413 1049 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 LMNB2Q03252 620 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 FOXD4Q12950 439 aaPredicted RBP13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 GPS1Q13098 491 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 KRT81Q14533 505 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 ERMARDQ5T6L9 678 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 DENND5BQ6ZUT9 1274 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 TRMT10CQ7L0Y3 403 aaKnown RBP13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 TAC4Q86UU9 113 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 SEC16BQ96JE7 1060 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 C17orf80Q9BSJ5 609 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 FAM129AQ9BZQ8 928 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 CYP4F11Q9HBI6 524 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 MTMR10Q9NXD2 777 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 MFHAS1Q9Y4C4 1052 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 NLRC5Q86WI3 1866 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 FAM72CH0Y354 149 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 HGSO14964 777 aaPredicted RBP13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 NRLP54845 237 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 CAV1Q03135 178 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 ACTN3Q08043 901 aaPredicted RBP13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 TAF10Q12962 218 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 FAM72AQ5TYM5 149 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 RASIP1Q5U651 963 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 FAM72DQ6L9T8 149 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 RHBDF2Q6PJF5 856 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 ARCQ7LC44 396 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 FAM72BQ86X60 149 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 RFX6Q8HWS3 928 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 DQX1Q8TE96 717 aaKnown RBP13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 CASP10Q92851 521 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 C8orf48Q96LL4 319 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 LBHD1Q9BQE6 289 aaPredicted RBP13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PCDH18Q9HCL0 1135 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 WDR6Q9NNW5 1121 aaKnown RBP13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PNPLA8Q9NP80 782 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 AP4E1Q9UPM8 1137 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PCDHB12Q9Y5F1 795 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PTPRSQ13332 1948 aa13.12□□□□□ -0.31
CDK5RAP3-217ENST00000580287 TEX28O15482 410 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 URODP06132 367 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 ATXN8OSP0DMR3 200 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PECAM1P16284 738 aaPredicted RBP13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 ERVFC1P60507 584 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 BOLA3Q53S33 107 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 BTBD8Q5XKL5 378 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PSRC1Q6PGN9 363 aaPredicted RBP13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 CAPN12Q6ZSI9 719 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 DDX53Q86TM3 631 aaKnown RBP13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 ZNF461Q8TAF7 563 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 SPPL2BQ8TCT7 592 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PGM2Q96G03 612 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 XPO6Q96QU8 1125 aaKnown RBP13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 KCTD15Q96SI1 283 aaPredicted RBP13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 RAD9AQ99638 391 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 KDM4CQ9H3R0 1056 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 STAP1Q9ULZ2 295 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PIAS1O75925 651 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 GOT1P17174 413 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 DNAJB1P25685 340 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 L1CAMP32004 1257 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 RDXP35241 583 aaKnown RBP13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PSEN1P49768 467 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 COPS2P61201 443 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 AUHQ13825 339 aaKnown RBP13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 C1orf228Q6PIY5 440 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 STRADAQ7RTN6 431 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 TMC7Q7Z402 723 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 BBOF1Q8ND07 529 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 PCDH19Q8TAB3 1148 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 HERVK_113Q902F9 699 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 FBXO32Q969P5 355 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 CERS4Q9HA82 394 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 ETNK2Q9NVF9 386 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 BACE2Q9Y5Z0 518 aa13.11□□□□□ -0.31
CDK5RAP3-217ENST00000580287 CREB3O43889 395 aa13.1□□□□□ -0.31
CDK5RAP3-217ENST00000580287 TTC4O95801 387 aa13.1□□□□□ -0.31
CDK5RAP3-217ENST00000580287 CNPP09543 421 aaKnown RBP13.1□□□□□ -0.31
CDK5RAP3-217ENST00000580287 KLRC2P26717 231 aa13.1□□□□□ -0.31
CDK5RAP3-217ENST00000580287 YWHAQP27348 245 aa13.1□□□□□ -0.31
CDK5RAP3-217ENST00000580287 MAGEA11P43364 429 aa13.1□□□□□ -0.31
CDK5RAP3-217ENST00000580287 OTUD4Q01804 1114 aaKnown RBP13.1□□□□□ -0.31
CDK5RAP3-217ENST00000580287 BNIPLQ7Z465 357 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms