RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 HERPUD2Q9BSE4 406 aa16.71■□□□□ 0.27
SS18-211ENST00000578954 DCLK3Q9C098 648 aa16.71■□□□□ 0.27
SS18-211ENST00000578954 PRDM16Q9HAZ2 1276 aa16.71■□□□□ 0.27
SS18-211ENST00000578954 CLDND1Q9NY35 253 aa16.71■□□□□ 0.27
SS18-211ENST00000578954 SLC12A6Q9UHW9 1150 aa16.71■□□□□ 0.27
SS18-211ENST00000578954 XPO7Q9UIA9 1087 aaKnown RBP16.71■□□□□ 0.27
SS18-211ENST00000578954 NEU3Q9UQ49 428 aa16.71■□□□□ 0.27
SS18-211ENST00000578954 HS3ST4Q9Y661 456 aa16.71■□□□□ 0.27
SS18-211ENST00000578954 NUP210Q8TEM1 1887 aaPredicted RBP16.7■□□□□ 0.26
SS18-211ENST00000578954 FAM72CH0Y354 149 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 H3BRJ5 948 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 PDE2AO00408 941 aaPredicted RBP16.7■□□□□ 0.26
SS18-211ENST00000578954 FGGP02679 453 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 KLKB1P03952 638 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 HMBSP08397 361 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 FSHRP23945 695 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 HARS2P49590 506 aaKnown RBP16.7■□□□□ 0.26
SS18-211ENST00000578954 CKAP4Q07065 602 aaKnown RBP16.7■□□□□ 0.26
SS18-211ENST00000578954 MS4A13Q5J8X5 152 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 FAM72AQ5TYM5 149 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 FAM72DQ6L9T8 149 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 FAM72BQ86X60 149 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 DDX42Q86XP3 938 aaKnown RBP eCLIP16.7■□□□□ 0.26
SS18-211ENST00000578954 CCDC50Q8IVM0 306 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 NPAS3Q8IXF0 933 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 KIAA1958Q8N8K9 716 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 WBP2Q969T9 261 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 MS4A14Q96JA4 679 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 FAM161BQ96MY7 647 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 CSPG4P5Q96PW8 444 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 RNF157Q96PX1 679 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 NAP1L3Q99457 506 aaPredicted RBP16.7■□□□□ 0.26
SS18-211ENST00000578954 GKN1Q9NS71 199 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 CWC15Q9P013 229 aaKnown RBP16.7■□□□□ 0.26
SS18-211ENST00000578954 OR12D3Q9UGF7 316 aa16.7■□□□□ 0.26
SS18-211ENST00000578954 DENND4AQ7Z401 1863 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 BRWD1Q9NSI6 2320 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 IGLV3-10A0A075B6K4 115 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 ACSL4O60488 711 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 LRIG2O94898 1065 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 MOCS2O96007 188 aaPredicted RBP16.69■□□□□ 0.26
SS18-211ENST00000578954 CORO1AP31146 461 aaKnown RBP16.69■□□□□ 0.26
SS18-211ENST00000578954 AVPR1AP37288 418 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 ARL4AP40617 200 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 USP4Q13107 963 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 MMRN1Q13201 1228 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 DPYSQ14117 519 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 SIX1Q15475 284 aaPredicted RBP16.69■□□□□ 0.26
SS18-211ENST00000578954 C5orf22Q49AR2 442 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 ANKRD20A8PQ5CZ79 823 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 PPP6R3Q5H9R7 873 aaPredicted RBP16.69■□□□□ 0.26
SS18-211ENST00000578954 ATAT1Q5SQI0 421 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 SLC9A4Q6AI14 798 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 NADSYN1Q6IA69 706 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 CES5AQ6NT32 575 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 BBS12Q6ZW61 710 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 HTR3DQ70Z44 454 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 FAM217AQ8IXS0 508 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 SMRP1Q8NCR6 262 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 PCDH19Q8TAB3 1148 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 MAIP1Q8WWC4 291 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 USP13Q92995 863 aaPredicted RBP16.69■□□□□ 0.26
SS18-211ENST00000578954 CAPZA3Q96KX2 299 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 EPAS1Q99814 870 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 CALN1Q9BXU9 219 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 KIF9Q9HAQ2 790 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 SMPD4Q9NXE4 827 aa16.69■□□□□ 0.26
SS18-211ENST00000578954 LEFTY2O00292 366 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 EEF2KO00418 725 aaKnown RBP16.68■□□□□ 0.26
SS18-211ENST00000578954 GFRA2O00451 464 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 TJP3O95049 919 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 GOT1P17174 413 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 MTHFRP42898 656 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 PAFAH1B1P43034 410 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 SLC11A2P49281 568 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 TFDP2Q14188 446 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 LONRF2Q1L5Z9 754 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 FAM133BQ5BKY9 247 aaKnown RBP16.68■□□□□ 0.26
SS18-211ENST00000578954 HABP4Q5JVS0 413 aaKnown RBP16.68■□□□□ 0.26
SS18-211ENST00000578954 CCDC181Q5TID7 509 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 RFX8Q6ZV50 586 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 ZDHHC14Q8IZN3 488 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 PQLC3Q8N755 202 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 MYLIPQ8WY64 445 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 ING5Q8WYH8 240 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 RIPOR3Q96MK2 946 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 ZSWIM3Q96MP5 696 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 GUCD1Q96NT3 240 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 CDX2Q99626 313 aaPredicted RBP16.68■□□□□ 0.26
SS18-211ENST00000578954 APOL5Q9BWW9 433 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 ARHGEF4Q9NR80 690 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 TDP1Q9NUW8 608 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 GDE1Q9NZC3 331 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 SMARCAL1Q9NZC9 954 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 PPARGC1AQ9UBK2 798 aaKnown RBP16.68■□□□□ 0.26
SS18-211ENST00000578954 CDH22Q9UJ99 828 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 LSM7Q9UK45 103 aaKnown RBP16.68■□□□□ 0.26
SS18-211ENST00000578954 AGO1Q9UL18 857 aaKnown RBP16.68■□□□□ 0.26
SS18-211ENST00000578954 ZNF510Q9Y2H8 683 aa16.68■□□□□ 0.26
SS18-211ENST00000578954 SNX10Q9Y5X0 201 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms