RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ACVR2BQ13705 512 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 BAATQ14032 418 aaPredicted RBP6.57□□□□□ -1.36
VPS53-212ENST00000572259 DAG1Q14118 895 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 EFR3AQ14156 821 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 KCNA10Q16322 511 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 QRICH1Q2TAL8 776 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 MUM1L1Q5H9M0 696 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 JMJD6Q6NYC1 403 aaPredicted RBP6.57□□□□□ -1.36
VPS53-212ENST00000572259 STOX1Q6ZVD7 989 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 ARMCX2Q7L311 632 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 RASGRP2Q7LDG7 609 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 OTOP2Q7RTS6 562 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 GALNTL5Q7Z4T8 443 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 SGMS1Q86VZ5 419 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 LIX1LQ8IVB5 337 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 CCDC33Q8N5R6 958 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 POU5F2Q8N7G0 328 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 FAM133AQ8N9E0 248 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 FANCBQ8NB91 859 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 DNERQ8NFT8 737 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 HERVK_113Q902F9 699 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 HTRA1Q92743 480 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 RRP36Q96EU6 259 aaKnown RBP6.57□□□□□ -1.36
VPS53-212ENST00000572259 C22orf23Q9BZE7 217 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 WNT8AQ9H1J5 351 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 C11orf49Q9H6J7 331 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 RIOX1Q9H6W3 641 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 LY9Q9HBG7 655 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 RBM28Q9NW13 759 aaKnown RBP6.57□□□□□ -1.36
VPS53-212ENST00000572259 CYP39A1Q9NYL5 469 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 WDR35Q9P2L0 1181 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 TBC1D29Q9UFV1 150 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 MAD2L2Q9UI95 211 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 VPS28Q9UK41 221 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 PCDHA1Q9Y5I3 950 aa6.57□□□□□ -1.36
VPS53-212ENST00000572259 KAT6AQ92794 2004 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 NPIPB6E9PJ23 425 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 DNM1LO00429 736 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 ZBTB43O43298 467 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 DUSP11O75319 330 aaKnown RBP6.56□□□□□ -1.36
VPS53-212ENST00000572259 IL18RAPO95256 599 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 OSMP13725 252 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 ALOX15P16050 662 aaPredicted RBP6.56□□□□□ -1.36
VPS53-212ENST00000572259 STMN1P16949 149 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 SERPINF1P36955 418 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 TNNT3P45378 269 aaPredicted RBP6.56□□□□□ -1.36
VPS53-212ENST00000572259 SLC5A3P53794 718 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 RCAN1P53805 252 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 ANTXR2P58335 489 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 LINC00310P59036 64 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 RPS6P62753 249 aaKnown RBP6.56□□□□□ -1.36
VPS53-212ENST00000572259 CNTN2Q02246 1040 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 STILQ15468 1287 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 FSCN1Q16658 493 aaKnown RBP6.56□□□□□ -1.36
VPS53-212ENST00000572259 SLC35G1Q2M3R5 365 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 TOR2AQ5JU69 321 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 PRAMEF19Q5SWL8 479 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 KANSL1Q7Z3B3 1105 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 CARNMT1Q8N4J0 409 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 RNF152Q8N8N0 203 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 PCSK9Q8NBP7 692 aaKnown RBP6.56□□□□□ -1.36
VPS53-212ENST00000572259 SPPL3Q8TCT6 385 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 MGARPQ8TDB4 240 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 CUL5Q93034 780 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 MAELQ96JY0 434 aaKnown RBP6.56□□□□□ -1.36
VPS53-212ENST00000572259 JAKMIP1Q96N16 626 aaKnown RBP6.56□□□□□ -1.36
VPS53-212ENST00000572259 SPZ1Q9BXG8 430 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 GHITMQ9H3K2 345 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 PREBQ9HCU5 417 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 CD320Q9NPF0 282 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 XPNPEP3Q9NQH7 507 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 SPATA6Q9NWH7 488 aaPredicted RBP6.56□□□□□ -1.36
VPS53-212ENST00000572259 DCAF16Q9NXF7 216 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 NTMQ9P121 344 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 FTSJ1Q9UET6 329 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 CYP46A1Q9Y6A2 500 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 MYH7BA7E2Y1 1941 aa6.56□□□□□ -1.36
VPS53-212ENST00000572259 A0A1W2PPC4 97 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 GCOM1H8Y6P7 765 aaPredicted RBP6.55□□□□□ -1.36
VPS53-212ENST00000572259 INO80B-WBP1J3KQ70 363 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 DOK2O60496 412 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 PCDH8O95206 1070 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 SNAI1O95863 264 aaPredicted RBP6.55□□□□□ -1.36
VPS53-212ENST00000572259 POLR2MP0CAP2 368 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 HARSP12081 509 aaKnown RBP6.55□□□□□ -1.36
VPS53-212ENST00000572259 MTHFD2P13995 350 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 HNRNPLP14866 589 aaKnown RBP eCLIP6.55□□□□□ -1.36
VPS53-212ENST00000572259 CASTP20810 708 aaKnown RBP6.55□□□□□ -1.36
VPS53-212ENST00000572259 RPL13P26373 211 aaKnown RBP6.55□□□□□ -1.36
VPS53-212ENST00000572259 ADCY8P40145 1251 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 AFF3P51826 1226 aaKnown RBP6.55□□□□□ -1.36
VPS53-212ENST00000572259 MLLT6P55198 1093 aaPredicted RBP6.55□□□□□ -1.36
VPS53-212ENST00000572259 AKAP17AQ02040 695 aaKnown RBP6.55□□□□□ -1.36
VPS53-212ENST00000572259 MAPK7Q13164 816 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 TRIM29Q14134 588 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 RTP5Q14D33 572 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 STXBP2Q15833 593 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 ADCK5Q3MIX3 580 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 ZBTB41Q5SVQ8 909 aa6.55□□□□□ -1.36
VPS53-212ENST00000572259 ARHGEF16Q5VV41 709 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms