RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 STAT6P42226 847 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 CASP4P49662 377 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 PSEN1P49768 467 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 BMT2Q1RMZ1 405 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 NCEH1Q6PIU2 408 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 CCDC73Q6ZRK6 1079 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 CRYBG2Q8N1P7 616 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 CPXM2Q8N436 756 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 XXYLT1Q8NBI6 393 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 RFFLQ8WZ73 363 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 TTC9Q92623 222 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 GOLGA1Q92805 767 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 CLIC6Q96NY7 704 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 AGPAT3Q9NRZ7 376 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 HMGXB4Q9UGU5 601 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 SUN2Q9UH99 717 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 PLXNA2O75051 1894 aa16.93■□□□□ 0.3
CLK3-223ENST00000568488 SLC12A8A0AV02 714 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 LRRC72A6NJI9 287 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 CSRP3P50461 194 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 E2F1Q01094 437 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 SRSF1Q07955 248 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLK3-223ENST00000568488 VAC14Q08AM6 782 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 NCOA4Q13772 614 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 MPPE1Q53F39 396 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 WFIKKN2Q8TEU8 576 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 CDK5RAP1Q96SZ6 601 aaKnown RBP16.92■□□□□ 0.3
CLK3-223ENST00000568488 PABPC3Q9H361 631 aaKnown RBP16.92■□□□□ 0.3
CLK3-223ENST00000568488 MTG2Q9H4K7 406 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 VRTNQ9H8Y1 702 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 ABCB8Q9NUT2 735 aa16.92■□□□□ 0.3
CLK3-223ENST00000568488 TP53BP1Q12888 1972 aaPredicted RBP16.91■□□□□ 0.3
CLK3-223ENST00000568488 TLR4O00206 839 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 TGFB1I1O43294 461 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 P4HA1P13674 534 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 TRIM21P19474 475 aaKnown RBP16.91■□□□□ 0.3
CLK3-223ENST00000568488 KIF11P52732 1056 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 NXPH1P58417 271 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 GABREP78334 506 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 SLC45A4Q5BKX6 768 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 USP30Q70CQ3 517 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 RSRC2Q7L4I2 434 aaKnown RBP16.91■□□□□ 0.3
CLK3-223ENST00000568488 LSMEM2Q8N112 164 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 ZNF276Q8N554 614 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 CYFIP2Q96F07 1278 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 HIC2Q96JB3 615 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 SERAC1Q96JX3 654 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 OMDQ99983 421 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.91■□□□□ 0.3
CLK3-223ENST00000568488 TRIM4Q9C037 500 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 GZF1Q9H116 711 aaPredicted RBP16.91■□□□□ 0.3
CLK3-223ENST00000568488 NEUROG2Q9H2A3 272 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 CLIC5Q9NZA1 410 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 MARCH2Q9P0N8 246 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 SERGEFQ9UGK8 458 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 STRIP2Q9ULQ0 834 aa16.91■□□□□ 0.3
CLK3-223ENST00000568488 PIEZO2Q9H5I5 2752 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 A0A1W2PP55 124 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 A0A1W2PR77 199 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 RNASEH2AO75792 299 aaKnown RBP16.9■□□□□ 0.3
CLK3-223ENST00000568488 ATP5BP06576 529 aaKnown RBP16.9■□□□□ 0.3
CLK3-223ENST00000568488 C7P10643 843 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 ACP1P24666 158 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 HOXD9P28356 352 aaPredicted RBP16.9■□□□□ 0.3
CLK3-223ENST00000568488 DAB2P98082 770 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 SFSWAPQ12872 951 aaKnown RBP16.9■□□□□ 0.3
CLK3-223ENST00000568488 KIAA1614Q5VZ46 1190 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 MBLAC2Q68D91 279 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 CCDC186Q7Z3E2 898 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 ADIPOR2Q86V24 386 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 UNC93AQ86WB7 457 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 NELFCDQ8IXH7 590 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 OXR1Q8N573 874 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 FAM117AQ9C073 453 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 RSPH9Q9H1X1 276 aaPredicted RBP16.9■□□□□ 0.3
CLK3-223ENST00000568488 IL17BQ9UHF5 180 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 GGA2Q9UJY4 613 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 SCML1Q9UN30 329 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 HEMK1Q9Y5R4 338 aaPredicted RBP16.9■□□□□ 0.3
CLK3-223ENST00000568488 CLIC4Q9Y696 253 aa16.9■□□□□ 0.3
CLK3-223ENST00000568488 MID1O15344 667 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 STX6O43752 255 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 RNASEH1O60930 286 aaKnown RBP16.89■□□□□ 0.29
CLK3-223ENST00000568488 SDC3O75056 442 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 USP12O75317 370 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 DLDP09622 509 aaKnown RBP16.89■□□□□ 0.29
CLK3-223ENST00000568488 PABPC1P11940 636 aaKnown RBP16.89■□□□□ 0.29
CLK3-223ENST00000568488 POLR2EP19388 210 aaKnown RBP16.89■□□□□ 0.29
CLK3-223ENST00000568488 RXRGP48443 463 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 KCNJ12Q14500 433 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 SFMBT2Q5VUG0 894 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 AHI1Q8N157 1196 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 OR2T34Q8NGX1 318 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 ZNF507Q8TCN5 953 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 TMA16Q96EY4 203 aaKnown RBP16.89■□□□□ 0.29
CLK3-223ENST00000568488 DPH1Q9BZG8 443 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 PNPLA8Q9NP80 782 aa16.89■□□□□ 0.29
CLK3-223ENST00000568488 FBXO2Q9UK22 296 aaPredicted RBP16.89■□□□□ 0.29
CLK3-223ENST00000568488 SRPRBQ9Y5M8 271 aaKnown RBP16.89■□□□□ 0.29
CLK3-223ENST00000568488 SIGLEC6O43699 453 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms