RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 NNTQ13423 1086 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 C2CD6Q53TS8 623 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 PIK3R6Q5UE93 754 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 ANO7Q6IWH7 933 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 RASSF3Q86WH2 238 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 NEK11Q8NG66 645 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 GAB3Q8WWW8 586 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 CPA5Q8WXQ8 436 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 MYEOVQ96EZ4 313 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 SLC2A11Q9BYW1 496 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 SYNCQ9H7C4 482 aa15.62■□□□□ 0.09
VPS39-210ENST00000568357 WASH3PC4AMC7 463 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 DCLK1O15075 740 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 IRAK2O43187 625 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 RPP40O75818 363 aaKnown RBP15.61■□□□□ 0.09
VPS39-210ENST00000568357 NTSR1P30989 418 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 STAT1P42224 750 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 SNX16P57768 344 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 ZNF445P59923 1031 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 CDR2Q01850 454 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 TMEM215Q68D42 235 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 CEP68Q76N32 757 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 SLC26A9Q7LBE3 791 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 ERICH1Q86X53 443 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 ZNF397Q8NF99 534 aaPredicted RBP15.61■□□□□ 0.09
VPS39-210ENST00000568357 MDGA1Q8NFP4 955 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 IPO4Q8TEX9 1081 aaKnown RBP15.61■□□□□ 0.09
VPS39-210ENST00000568357 C18orf8Q96DM3 657 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 SPAG5Q96R06 1193 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 NUCKS1Q9H1E3 243 aaKnown RBP15.61■□□□□ 0.09
VPS39-210ENST00000568357 RTN4Q9NQC3 1192 aaKnown RBP15.61■□□□□ 0.09
VPS39-210ENST00000568357 INVSQ9Y283 1065 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 DAAM1Q9Y4D1 1078 aa15.61■□□□□ 0.09
VPS39-210ENST00000568357 ATRXP46100 2492 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 A0A1W2PQF6 199 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 KCNU1A8MYU2 1149 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 LSM8O95777 96 aaKnown RBP15.6■□□□□ 0.09
VPS39-210ENST00000568357 MOCS2O96007 188 aaPredicted RBP15.6■□□□□ 0.09
VPS39-210ENST00000568357 HLA-FP30511 346 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 RNASE9P60153 205 aaKnown RBP15.6■□□□□ 0.09
VPS39-210ENST00000568357 NOMO3P69849 1222 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 CDK17Q00537 523 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 FMO1Q01740 532 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 NAA35Q5VZE5 725 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 RNF43Q68DV7 783 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 TRMT11Q7Z4G4 463 aaKnown RBP15.6■□□□□ 0.09
VPS39-210ENST00000568357 KBTBD6Q86V97 674 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 ZNF677Q86XU0 584 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 XYLT1Q86Y38 959 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 ZDHHC17Q8IUH5 632 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 CHPFQ8IZ52 775 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 FAM160A2Q8N612 972 aaPredicted RBP15.6■□□□□ 0.09
VPS39-210ENST00000568357 WFDC5Q8TCV5 224 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 ERLEC1Q96DZ1 483 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 NAP1L5Q96NT1 182 aaPredicted RBP15.6■□□□□ 0.09
VPS39-210ENST00000568357 PCDHB18PQ96TA0 734 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 GABRG3Q99928 467 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 ADAM33Q9BZ11 813 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 TPSD1Q9BZJ3 242 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 FAM204AQ9H8W3 233 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 CD248Q9HCU0 757 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 POLMQ9NP87 494 aaPredicted RBP15.6■□□□□ 0.09
VPS39-210ENST00000568357 CACNA2D2Q9NY47 1150 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 CALCOCO1Q9P1Z2 691 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 RAB23Q9ULC3 237 aa15.6■□□□□ 0.09
VPS39-210ENST00000568357 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.6■□□□□ 0.09
VPS39-210ENST00000568357 SYNJ2BP-COX16A0A087WUM0 186 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 TCRBV21S2A2A0A5A6 115 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 TBL1XO60907 577 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 CYP1A1P04798 512 aaPredicted RBP15.59■□□□□ 0.09
VPS39-210ENST00000568357 TFE3P19532 575 aaPredicted RBP15.59■□□□□ 0.09
VPS39-210ENST00000568357 NOS2P35228 1153 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 RPS24P62847 133 aaKnown RBP15.59■□□□□ 0.09
VPS39-210ENST00000568357 ARID5AQ03989 594 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 MS4A13Q5J8X5 152 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 MPP7Q5T2T1 576 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 LAIR1Q6GTX8 287 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 KIAA1211LQ6NV74 962 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 CACNA2D4Q7Z3S7 1137 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 ANKS1BQ7Z6G8 1248 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 CFAP52Q8N1V2 620 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 HMGB4Q8WW32 186 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 SORCS1Q8WY21 1168 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 PRICKLE1Q96MT3 831 aaPredicted RBP15.59■□□□□ 0.09
VPS39-210ENST00000568357 IRX2Q9BZI1 471 aaPredicted RBP15.59■□□□□ 0.09
VPS39-210ENST00000568357 CBX8Q9HC52 389 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.59■□□□□ 0.09
VPS39-210ENST00000568357 DDIT4Q9NX09 232 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 ELOVL2Q9NXB9 296 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 COX16Q9P0S2 106 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 STIM2Q9P246 746 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 THAP10Q9P2Z0 257 aaPredicted RBP15.59■□□□□ 0.09
VPS39-210ENST00000568357 RAD54BQ9Y620 910 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 KIAA1549LQ6ZVL6 1849 aa15.59■□□□□ 0.09
VPS39-210ENST00000568357 SLC30A4O14863 429 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 TIMM44O43615 452 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 DAB1O75553 588 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 ALDH1A2O94788 518 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 APOEP02649 317 aa15.58■□□□□ 0.08
VPS39-210ENST00000568357 HOXB2P14652 356 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms