RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HTR3DQ70Z44 454 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 PHLDB2Q86SQ0 1253 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 PHF13Q86YI8 300 aaPredicted RBP17.95■□□□□ 0.46
CLN3-217ENST00000565354 CNGA4Q8IV77 575 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 BBS7Q8IWZ6 715 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 DRC7Q8IY82 874 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 OR8K1Q8NGG5 319 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 DQX1Q8TE96 717 aaKnown RBP17.95■□□□□ 0.46
CLN3-217ENST00000565354 OTUB2Q96DC9 234 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 MRFAP1L1Q96HT8 127 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 SELENOOQ9BVL4 669 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 LINC00597Q9H2U6 94 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 HPS4Q9NQG7 708 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.95■□□□□ 0.46
CLN3-217ENST00000565354 STAP1Q9ULZ2 295 aa17.95■□□□□ 0.46
CLN3-217ENST00000565354 FASNP49327 2511 aaKnown RBP17.95■□□□□ 0.46
CLN3-217ENST00000565354 ANKRD11Q6UB99 2663 aaPredicted RBP17.95■□□□□ 0.46
CLN3-217ENST00000565354 SYNJ2BP-COX16A0A087WUM0 186 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 AKR1B15C9JRZ8 316 aaPredicted RBP17.94■□□□□ 0.46
CLN3-217ENST00000565354 MFAP3LO75121 409 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 FYNP06241 537 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 NOS2P35228 1153 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 SCNN1AP37088 669 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 PXNP49023 591 aaPredicted RBP17.94■□□□□ 0.46
CLN3-217ENST00000565354 C1QBPQ07021 282 aaKnown RBP17.94■□□□□ 0.46
CLN3-217ENST00000565354 TRIP4Q15650 581 aaPredicted RBP17.94■□□□□ 0.46
CLN3-217ENST00000565354 SYPL2Q5VXT5 272 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 TAC4Q86UU9 113 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 UNC45BQ8IWX7 931 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 ADAM32Q8TC27 787 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 RNF34Q969K3 372 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 WBP2Q969T9 261 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 SLC2A13Q96QE2 648 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 DEF6Q9H4E7 631 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 ECT2Q9H8V3 914 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 METTL5Q9NRN9 209 aaKnown RBP17.94■□□□□ 0.46
CLN3-217ENST00000565354 COX16Q9P0S2 106 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 PCDHGA5Q9Y5G8 931 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 SPEGQ15772 3267 aa17.94■□□□□ 0.46
CLN3-217ENST00000565354 TRUB2O95900 331 aaKnown RBP17.93■□□□□ 0.46
CLN3-217ENST00000565354 ADH1CP00326 375 aa17.93■□□□□ 0.46
CLN3-217ENST00000565354 ADKP55263 362 aaKnown RBP17.93■□□□□ 0.46
CLN3-217ENST00000565354 NUGGCQ68CJ6 796 aa17.93■□□□□ 0.46
CLN3-217ENST00000565354 DNAJC24Q6P3W2 148 aa17.93■□□□□ 0.46
CLN3-217ENST00000565354 PKN3Q6P5Z2 889 aa17.93■□□□□ 0.46
CLN3-217ENST00000565354 DENND1CQ8IV53 801 aa17.93■□□□□ 0.46
CLN3-217ENST00000565354 EXOC4Q96A65 974 aa17.93■□□□□ 0.46
CLN3-217ENST00000565354 SYT11Q9BT88 431 aa17.93■□□□□ 0.46
CLN3-217ENST00000565354 SMOC1Q9H4F8 434 aa17.93■□□□□ 0.46
CLN3-217ENST00000565354 ABHD10Q9NUJ1 306 aa17.93■□□□□ 0.46
CLN3-217ENST00000565354 RRN3Q9NYV6 651 aa17.93■□□□□ 0.46
CLN3-217ENST00000565354 ANKRD62A6NC57 917 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 DDX3XO00571 662 aaKnown RBP eCLIP17.92■□□□□ 0.46
CLN3-217ENST00000565354 RTN2O75298 545 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 APOEP02649 317 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 GZMAP12544 262 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 MPLP40238 635 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 MATKP42679 507 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 SULT1E1P49888 294 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 NNTQ13423 1086 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 ANO4Q32M45 955 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 HGSNATQ68CP4 663 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 MON1BQ7L1V2 547 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 ZC3H10Q96K80 434 aaKnown RBP17.92■□□□□ 0.46
CLN3-217ENST00000565354 DNAJC7Q99615 494 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 DDIT4Q9NX09 232 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 TAS2R14Q9NYV8 317 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 ADAMTS1Q9UHI8 967 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 TLR6Q9Y2C9 796 aa17.92■□□□□ 0.46
CLN3-217ENST00000565354 NUP205Q92621 2012 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 PKD1L2Q7Z442 2459 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 M0QYT0 321 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 IRAK2O43187 625 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 MOCS2O96007 188 aaPredicted RBP17.91■□□□□ 0.46
CLN3-217ENST00000565354 CYP17A1P05093 508 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 PLEKP08567 350 aaPredicted RBP17.91■□□□□ 0.46
CLN3-217ENST00000565354 ADH5P11766 374 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 KRT3P12035 628 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 CHKAP35790 457 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 SLC11A2P49281 568 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 GAD2Q05329 585 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 RING1Q06587 406 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 NME3Q13232 169 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 DHCR24Q15392 516 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 RNF43Q68DV7 783 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 PSAPL1Q6NUJ1 521 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 Q6ZNB5 142 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 TPGS1Q6ZTW0 290 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 SND1Q7KZF4 910 aaKnown RBP eCLIP17.91■□□□□ 0.469e-9■■■■■ 28
CLN3-217ENST00000565354 MCOLN2Q8IZK6 566 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 ADGRG2Q8IZP9 1017 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 TRIM11Q96F44 468 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 VPS45Q9NRW7 570 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 SLC12A6Q9UHW9 1150 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 AGO1Q9UL18 857 aaKnown RBP17.91■□□□□ 0.46
CLN3-217ENST00000565354 SLC8A2Q9UPR5 921 aa17.91■□□□□ 0.46
CLN3-217ENST00000565354 GOLGA6L6A8MZA4 724 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 ATG13O75143 517 aa17.9■□□□□ 0.46
CLN3-217ENST00000565354 FTLP02792 175 aaPredicted RBP17.9■□□□□ 0.46
CLN3-217ENST00000565354 CYBBP04839 570 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms