RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SLC12A8A0AV02 714 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 LRRC72A6NJI9 287 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 RNASEH1O60930 286 aaKnown RBP7.66□□□□□ -1.18
VPS4A-203ENST00000564399 MT-CO3P00414 261 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 WNT1P04628 370 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 CD38P28907 300 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 EPHA8P29322 1005 aaPredicted RBP7.66□□□□□ -1.18
VPS4A-203ENST00000564399 HOXD13P35453 343 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 CASP4P49662 377 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 SFSWAPQ12872 951 aaKnown RBP7.66□□□□□ -1.18
VPS4A-203ENST00000564399 BNIP3Q12983 259 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 NCOA4Q13772 614 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 SHBQ15464 509 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 BMT2Q1RMZ1 405 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 PKDCCQ504Y2 493 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 MPPE1Q53F39 396 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 SLC45A4Q5BKX6 768 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 NCEH1Q6PIU2 408 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 CLEC20AQ6ZU45 233 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 PRICKLE2Q7Z3G6 844 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 SCD5Q86SK9 330 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 DHX40Q8IX18 779 aaKnown RBP7.66□□□□□ -1.18
VPS4A-203ENST00000564399 NELFCDQ8IXH7 590 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 CRYBG2Q8N1P7 616 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 CPXM2Q8N436 756 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 PDILTQ8N807 584 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 RBBP8NLQ8NC74 664 aaPredicted RBP7.66□□□□□ -1.18
VPS4A-203ENST00000564399 WFIKKN2Q8TEU8 576 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 TSC1Q92574 1164 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 CYFIP2Q96F07 1278 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 CLIC6Q96NY7 704 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 ORAI3Q9BRQ5 295 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 TMEM245Q9H330 911 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 VRTNQ9H8Y1 702 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 AGPAT3Q9NRZ7 376 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 FBXL12Q9NXK8 326 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 MARCH2Q9P0N8 246 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 HMGXB4Q9UGU5 601 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 SUN2Q9UH99 717 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 ADAMTS1Q9UHI8 967 aa7.66□□□□□ -1.18
VPS4A-203ENST00000564399 USP9XQ93008 2570 aaPredicted RBP7.66□□□□□ -1.18
VPS4A-203ENST00000564399 HHLA1C9JL84 531 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 EIF3DO15371 548 aaKnown RBP eCLIP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 KLK10O43240 276 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 TGFB1I1O43294 461 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 STX6O43752 255 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 EXOC3O60645 756 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 MPOP05164 745 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 ATP5BP06576 529 aaKnown RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 DLDP09622 509 aaKnown RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 KRT10P13645 584 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 POLR2EP19388 210 aaKnown RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 HLA-FP30511 346 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 KIF11P52732 1056 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 GALCP54803 685 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 DAB2P98082 770 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 E2F1Q01094 437 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 INSM1Q01101 510 aaPredicted RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 MBLAC2Q68D91 279 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 USP30Q70CQ3 517 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 CCDC186Q7Z3E2 898 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 UNC93AQ86WB7 457 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 LSMEM2Q8N112 164 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 CACTIN-AS1Q8N1I8 211 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 ZNF276Q8N554 614 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 DCBLD1Q8N8Z6 715 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 ZNF507Q8TCN5 953 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 KCNE4Q8WWG9 221 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 TMA16Q96EY4 203 aaKnown RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 MED8Q96G25 268 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 SERAC1Q96JX3 654 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 ZNF578Q96N58 590 aaPredicted RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 HNRNPABQ99729 332 aaKnown RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 OMDQ99983 421 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 PABPC3Q9H361 631 aaKnown RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 MTG2Q9H4K7 406 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 PNPLA8Q9NP80 782 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 ABCB8Q9NUT2 735 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 CLIC5Q9NZA1 410 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 GGA2Q9UJY4 613 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 FBXO2Q9UK22 296 aaPredicted RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 SCML1Q9UN30 329 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 SMC3Q9UQE7 1217 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 PCDHB1Q9Y5F3 818 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 SRPRBQ9Y5M8 271 aaKnown RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 HEMK1Q9Y5R4 338 aaPredicted RBP7.65□□□□□ -1.18
VPS4A-203ENST00000564399 CLIC4Q9Y696 253 aa7.65□□□□□ -1.18
VPS4A-203ENST00000564399 TLN1Q9Y490 2541 aaKnown RBP7.64□□□□□ -1.19
VPS4A-203ENST00000564399 RP1P56715 2156 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 A0A1W2PP55 124 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 A0A1W2PR77 199 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 TLR4O00206 839 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 WNT9AO14904 365 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 RNASEH2AO75792 299 aaKnown RBP7.64□□□□□ -1.19
VPS4A-203ENST00000564399 VNN1O95497 513 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 PABPC1P11940 636 aaKnown RBP7.64□□□□□ -1.19
VPS4A-203ENST00000564399 HOXD9P28356 352 aaPredicted RBP7.64□□□□□ -1.19
VPS4A-203ENST00000564399 HARS2P49590 506 aaKnown RBP7.64□□□□□ -1.19
VPS4A-203ENST00000564399 AP3M2P53677 418 aa7.64□□□□□ -1.19
VPS4A-203ENST00000564399 NXPH1P58417 271 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms