RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	SPATA7	Q9P0W8	599 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	FAM170A	A1A519	330 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	MATN2	O00339	956 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	ZBED1	O96006	694 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	PRKCB	P05771	671 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	CYP11B1	P15538	503 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	PML	P29590	882 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	HSPA13	P48723	471 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	ARSE	P51690	589 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	MFAP3	P55082	362 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	MCCD1	P59942	119 aa	Predicted RBP	11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	ADAM17	P78536	824 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	HIF1A	Q16665	826 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	KIZ	Q2M2Z5	673 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	LHX8	Q68G74	356 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	GRAMD4	Q6IC98	578 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	SLC25A41	Q8N5S1	370 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	ZSWIM2	Q8NEG5	633 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	ACTRT2	Q8TDY3	377 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	SLC26A7	Q8TE54	656 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	CCDC97	Q96F63	343 aa	Predicted RBP	11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	GRIP2	Q9C0E4	1043 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	STN1	Q9H668	368 aa	Known RBP	11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	MINDY3	Q9H8M7	445 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	IFT122	Q9HBG6	1241 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	PCDH9	Q9HC56	1237 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	ITGA11	Q9UKX5	1188 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	FAF1	Q9UNN5	650 aa	Predicted RBP	11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	CEPT1	Q9Y6K0	416 aa		11.41	□□□□□ -0.58
TCF4-222	ENST00000564228	SMIM35	A0A1B0GVV1	85 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	TMEM247	A6NEH6	219 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	C2orf71	A6NGG8	1288 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228		E7ESA3	106 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	MAGEB3	O15480	346 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	CYP26A1	O43174	497 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	DNAJA2	O60884	412 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	CDH2	P19022	906 aa	Predicted RBP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	PCSK6	P29122	969 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	HOXD12	P35452	270 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	CDK9	P50750	372 aa	Known RBP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	GPC3	P51654	580 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	VAMP7	P51809	220 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	ACLY	P53396	1101 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	SNRPF	P62306	86 aa	Known RBP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	WASHC5	Q12768	1159 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	GPS1	Q13098	491 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	HSF5	Q4G112	596 aa	Predicted RBP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	GDF6	Q6KF10	455 aa	Predicted RBP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	SH2D5	Q6ZV89	423 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	SLC47A2	Q86VL8	602 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	C12orf56	Q8IXR9	622 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	CCDC33	Q8N5R6	958 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	XXYLT1	Q8NBI6	393 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	PYROXD1	Q8WU10	500 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	APBB2	Q92870	758 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	TTC17	Q96AE7	1141 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	DCUN1D1	Q96GG9	259 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	ZBTB45	Q96K62	511 aa	Predicted RBP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	KREMEN1	Q96MU8	473 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	FAM111A	Q96PZ2	611 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	HNRNPAB	Q99729	332 aa	Known RBP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	HEMGN	Q9BXL5	484 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	MRPL4	Q9BYD3	311 aa	Known RBP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	MRPL1	Q9BYD6	325 aa	Known RBP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	PFDN4	Q9NQP4	134 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	GTF2IRD1	Q9UHL9	959 aa		11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	HBS1L	Q9Y450	684 aa	Known RBP	11.4	□□□□□ -0.58
TCF4-222	ENST00000564228	CCDC162P	A2VCL2	907 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	TRIM43B	A6NCK2	446 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	ARHGAP42	A6NI28	874 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228		E5RJQ4	531 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	B4GALT5	O43286	388 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	SERPINB7	O75635	380 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	KLHL2	O95198	593 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	RAG1	P15918	1043 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	ACAT1	P24752	427 aa	Known RBP	11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	ALDH1A3	P47895	512 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	COG7	P83436	770 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	MBTD1	Q05BQ5	628 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	LRRC36	Q1X8D7	754 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	GRAMD1B	Q3KR37	738 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	KBTBD6	Q86V97	674 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	TTC13	Q8NBP0	860 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	DDX1	Q92499	740 aa	Known RBP	11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	MRRF	Q96E11	262 aa	Known RBP	11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	HSPBAP1	Q96EW2	488 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	GLT1D1	Q96MS3	346 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	AGAP3	Q96P47	875 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	HAUS8	Q9BT25	410 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	ALG13	Q9NP73	1137 aa	Known RBP	11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	MKS1	Q9NXB0	559 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	UBAP1	Q9NZ09	502 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	RSL24D1	Q9UHA3	163 aa	Known RBP	11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	PSMD13	Q9UNM6	376 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	TRIP11	Q15643	1979 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	CIT	O14578	2027 aa		11.39	□□□□□ -0.59
TCF4-222	ENST00000564228	SDR42E2	A6NKP2	422 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms