RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 KLHL11Q9NVR0 708 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 SLC23A1Q9UHI7 598 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 ZNF180Q9UJW8 692 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 DMTF1Q9Y222 760 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 MAP3K19Q56UN5 1328 aa5.4□□□□□ -1.55
VPS35-205ENST00000563984 MYO3BQ8WXR4 1341 aa5.4□□□□□ -1.55
VPS35-205ENST00000563984 MYBBP1AQ9BQG0 1328 aaKnown RBP5.4□□□□□ -1.55
VPS35-205ENST00000563984 GRID2IPA4D2P6 1211 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 OR6C65A6NJZ3 312 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 KRTAP29-1A8MX34 341 aaPredicted RBP5.39□□□□□ -1.55
VPS35-205ENST00000563984 APAF1O14727 1248 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 ERLIN2O94905 339 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 MT-CO1P00395 513 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 DNTTP04053 509 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 APOA4P06727 396 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 IVLP07476 585 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 HSD3B1P14060 373 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 IL10P22301 178 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 HNF4AP41235 474 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 VPS41P49754 854 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 PLTPP55058 493 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 CCNA1P78396 465 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 BLOC1S1P78537 153 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 ATP8B2P98198 1209 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 ACAP2Q15057 778 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 MAPRE2Q15555 327 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 SNCBQ16143 134 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 TWF2Q6IBS0 349 aaKnown RBP5.39□□□□□ -1.55
VPS35-205ENST00000563984 LIN54Q6MZP7 749 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 RETSATQ6NUM9 610 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 ZNF600Q6ZNG1 722 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 GALNTL5Q7Z4T8 443 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 CAND1Q86VP6 1230 aaKnown RBP5.39□□□□□ -1.55
VPS35-205ENST00000563984 RHOT1Q8IXI2 618 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 TMEM132CQ8N3T6 1108 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 LCORLQ8N3X6 602 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 LRRC71Q8N4P6 559 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 XXYLT1Q8NBI6 393 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 OR52K1Q8NGK4 314 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 GPR150Q8NGU9 434 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 CTCFLQ8NI51 663 aaPredicted RBP5.39□□□□□ -1.55
VPS35-205ENST00000563984 DENND1AQ8TEH3 1009 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 POF1BQ8WVV4 589 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 SMARCE1Q969G3 411 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 SGK3Q96BR1 496 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 MTMR8Q96EF0 704 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 VPS39Q96JC1 886 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 ART5Q96L15 291 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 ATP6V1G3Q96LB4 118 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 CAMKK2Q96RR4 588 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 OSBPL9Q96SU4 736 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 RMDN3Q96TC7 470 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 TSG101Q99816 390 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 CCT7Q99832 543 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 ADAM2Q99965 735 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 ZPBPQ9BS86 351 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 SLC26A6Q9BXS9 759 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 RHOBTB2Q9BYZ6 727 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 WDR11Q9BZH6 1224 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 UPF3BQ9BZI7 483 aaKnown RBP5.39□□□□□ -1.55
VPS35-205ENST00000563984 WNT5BQ9H1J7 359 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 TOR3AQ9H497 397 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 RNPEPQ9H4A4 650 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 GRPEL1Q9HAV7 217 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 TRPV4Q9HBA0 871 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 BATF3Q9NR55 127 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 INTS10Q9NVR2 710 aaKnown RBP5.39□□□□□ -1.55
VPS35-205ENST00000563984 RRN3Q9NYV6 651 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 TEKT2Q9UIF3 430 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 HOOK1Q9UJC3 728 aaKnown RBP5.39□□□□□ -1.55
VPS35-205ENST00000563984 TUBD1Q9UJT1 453 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 PTBP2Q9UKA9 531 aaKnown RBP5.39□□□□□ -1.55
VPS35-205ENST00000563984 CLEC4AQ9UMR7 237 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 PHTF1Q9UMS5 762 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 FAM50BQ9Y247 325 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 ZNF510Q9Y2H8 683 aa5.39□□□□□ -1.55
VPS35-205ENST00000563984 KAT6AQ92794 2004 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 GPR75-ASB3A0A0A6YYF3 556 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 A0A1B0GTW7 788 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 ABHD14A-ACY1A0A1B0GW23 586 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 PIPSLA2A3N6 862 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 CTAGE9A4FU28 777 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 B4DLN1 442 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 GABRDO14764 452 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 PCDHGA12O60330 932 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 TSPAN3O60637 253 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 ADCY5O95622 1261 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 SLC3A2P08195 630 aaKnown RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 PDGFRAP16234 1089 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 C5AR1P21730 350 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 RPL9P32969 192 aaKnown RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 HNF1BP35680 557 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 CETN2P41208 172 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 ABCG1P45844 678 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 MTIF2P46199 727 aaKnown RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 AVPR1BP47901 424 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 GCLCP48506 637 aaPredicted RBP5.38□□□□□ -1.55
VPS35-205ENST00000563984 IFNAR2P48551 515 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 USP14P54578 494 aa5.38□□□□□ -1.55
VPS35-205ENST00000563984 CTXN1P60606 82 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms