RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ARSEP51690 589 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 ZNF135P52742 658 aaPredicted RBP9.26□□□□□ -0.93
VPS39-207ENST00000563692 VCPP55072 806 aaKnown RBP9.26□□□□□ -0.93
VPS39-207ENST00000563692 DYNLT1P63172 113 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 DPYSL3Q14195 570 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 SLMAPQ14BN4 828 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 TRADDQ15628 312 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 ANKRD20A8PQ5CZ79 823 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 EFHC2Q5JST6 749 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 SPDYCQ5MJ68 293 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 BSPRYQ5W0U4 402 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 BTBD8Q5XKL5 378 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 PCGF5Q86SE9 256 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 SCN4BQ8IWT1 228 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 GSPT2Q8IYD1 628 aaKnown RBP9.26□□□□□ -0.93
VPS39-207ENST00000563692 NUP93Q8N1F7 819 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 ARHGAP18Q8N392 663 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 SLC7A14Q8TBB6 771 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 FAM71BQ8TC56 605 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 SPPL2BQ8TCT7 592 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 RSAD2Q8WXG1 361 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 ATG4AQ8WYN0 398 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 NDRG1Q92597 394 aaKnown RBP9.26□□□□□ -0.93
VPS39-207ENST00000563692 ART4Q93070 314 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 PGAP3Q96FM1 320 aaPredicted RBP9.26□□□□□ -0.93
VPS39-207ENST00000563692 SNF8Q96H20 258 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 GDAP1L1Q96MZ0 367 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 PEBP4Q96S96 227 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 TMEM209Q96SK2 561 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 PRRX2Q99811 253 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 CLSTN3Q9BQT9 956 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 HERPUD2Q9BSE4 406 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 SNRNP25Q9BV90 132 aaKnown RBP9.26□□□□□ -0.93
VPS39-207ENST00000563692 PRKD2Q9BZL6 878 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 FOXP3Q9BZS1 431 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 FBXO44Q9H4M3 255 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 DHX35Q9H5Z1 703 aaKnown RBP9.26□□□□□ -0.93
VPS39-207ENST00000563692 PCDH18Q9HCL0 1135 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 MED4Q9NPJ6 270 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 ABCC13Q9NSE7 274 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 TMLHEQ9NVH6 421 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 COMMD8Q9NX08 183 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 ABI2Q9NYB9 513 aaPredicted RBP9.26□□□□□ -0.93
VPS39-207ENST00000563692 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.26□□□□□ -0.93
VPS39-207ENST00000563692 IGSF9Q9P2J2 1179 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 RCOR3Q9P2K3 495 aaPredicted RBP9.26□□□□□ -0.93
VPS39-207ENST00000563692 MTRRQ9UBK8 725 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 ANAPC5Q9UJX4 755 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 FBXW11Q9UKB1 542 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 HPCAL4Q9UM19 191 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 NAALADL1Q9UQQ1 740 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 BACE2Q9Y5Z0 518 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 USP3Q9Y6I4 520 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 TDRD15B5MCY1 1934 aaKnown RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 YJEFN3A6XGL0 299 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 E7ENQ6 273 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 H3BRJ5 948 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 SGK1O00141 431 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 ZNF189O75820 626 aaPredicted RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 CD48P09326 243 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 FAM153BP0C7A2 387 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 CYP2F1P24903 491 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 HOXA9P31269 272 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 L1CAMP32004 1257 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 OR1D2P34982 312 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 ACTN2P35609 894 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 HSPA9P38646 679 aaKnown RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 RPL21P46778 160 aaKnown RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 NR2C2P49116 596 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 EIF3EP60228 445 aaKnown RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 YWHAGP61981 247 aaKnown RBP eCLIP9.25□□□□□ -0.93
VPS39-207ENST00000563692 RPL10AP62906 217 aaKnown RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 OTUD4Q01804 1114 aaKnown RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 ADCY2Q08462 1091 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 NME3Q13232 169 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 GPR17Q13304 367 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 RAB33AQ14088 237 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 DPYSL2Q16555 572 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 CCDC142Q17RM4 750 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 FAM153CQ494X1 144 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 PPP6R3Q5H9R7 873 aaPredicted RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 DARS2Q6PI48 645 aaKnown RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 LILRA6Q6PI73 481 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 PDZD4Q76G19 769 aaPredicted RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 RTL10Q7L3V2 364 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 GET4Q7L5D6 327 aaPredicted RBP9.25□□□□□ -0.93
VPS39-207ENST00000563692 ANKS1BQ7Z6G8 1248 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 FBXL6Q8N531 539 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 ALLCQ8N6M5 410 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 SLC35B2Q8TB61 432 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 ACTL9Q8TC94 416 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 RNF139Q8WU17 664 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 RNF34Q969K3 372 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 CEP295NLQ96MC4 621 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 FERMT1Q9BQL6 677 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 MFSD1Q9H3U5 465 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 WDCPQ9H6R7 721 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 FAM204AQ9H8W3 233 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 FAM153AQ9UHL3 310 aa9.25□□□□□ -0.93
VPS39-207ENST00000563692 FBXL21Q9UKT6 434 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms