RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 C1orf21Q9H246 121 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 CYP4F11Q9HBI6 524 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 SSU72Q9NP77 194 aaKnown RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 CPA4Q9UI42 421 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 AGO2Q9UKV8 859 aaKnown RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 TMA7Q9Y2S6 64 aaKnown RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 CCNT2O60583 730 aaKnown RBP13.69□□□□□ -0.22
CLK3-206ENST00000562078 TKTP29401 623 aaKnown RBP13.69□□□□□ -0.22
CLK3-206ENST00000562078 CDKL1Q00532 357 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 FMO1Q01740 532 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 CAPSQ13938 189 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 FAM160B1Q5W0V3 765 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 DCLRE1AQ6PJP8 1040 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 HPS6Q86YV9 775 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 ANKMY2Q8IV38 441 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 TRIML2Q8N7C3 387 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 CCDC89Q8N998 374 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 ZNF516Q92618 1163 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 TARS2Q9BW92 718 aaKnown RBP13.69□□□□□ -0.22
CLK3-206ENST00000562078 MAN1C1Q9NR34 630 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 KCNK4Q9NYG8 393 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 EBF1Q9UH73 591 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 POMPQ9Y244 141 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 PTPRJQ12913 1337 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 CALCAP01258 141 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 ZSCAN5DPP0CG00 497 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 KRT5P13647 590 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 CYP11B1P15538 503 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 TNNI1P19237 187 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 MAN1A1P33908 653 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 NUP107P57740 925 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 YWHAGP61981 247 aaKnown RBP eCLIP13.69□□□□□ -0.22
CLK3-206ENST00000562078 TARBP2Q15633 366 aaKnown RBP13.69□□□□□ -0.22
CLK3-206ENST00000562078 ZBTB41Q5SVQ8 909 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 GSTA5Q7RTV2 222 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.69□□□□□ -0.22
CLK3-206ENST00000562078 BBOF1Q8ND07 529 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 SREK1Q8WXA9 508 aaKnown RBP13.69□□□□□ -0.22
CLK3-206ENST00000562078 PLEKHA8Q96JA3 519 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 SHCBP1LQ9BZQ2 653 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 C1orf112Q9NSG2 853 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 SLC24A2Q9UI40 661 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 RAB26Q9ULW5 256 aa13.69□□□□□ -0.22
CLK3-206ENST00000562078 GNEQ9Y223 722 aaKnown RBP13.69□□□□□ -0.22
CLK3-206ENST00000562078 SF3B1O75533 1304 aaKnown RBP eCLIP13.69□□□□□ -0.22
CLK3-206ENST00000562078 A0A1W2PQ67 120 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 DYTNA2CJ06 578 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 LPXNO60711 386 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 PABPC1P11940 636 aaKnown RBP13.68□□□□□ -0.22
CLK3-206ENST00000562078 ZNF12P17014 697 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 NELFEP18615 380 aaKnown RBP13.68□□□□□ -0.22
CLK3-206ENST00000562078 AQP5P55064 265 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 GPR142Q7Z601 462 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 DDHD1Q8NEL9 900 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 TSPAN14Q8NG11 270 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 MORC4Q8TE76 937 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 MZB1Q8WU39 189 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 SEPT1Q8WYJ6 367 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 HGH1Q9BTY7 390 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 NRBP2Q9NSY0 501 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 CDH22Q9UJ99 828 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 POLIQ9UNA4 740 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 TMEM88BA6NKF7 163 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 SOBPA7XYQ1 873 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 CNOT3O75175 753 aaKnown RBP13.68□□□□□ -0.22
CLK3-206ENST00000562078 PROCP04070 461 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 TGFB3P10600 412 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 ZNF23P17027 643 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 ETV4P43268 484 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 GPX6P59796 221 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 IRX4P78413 519 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 TCEAL1Q15170 157 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 CCNG2Q16589 344 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 HSDL1Q3SXM5 330 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 C15orf39Q6ZRI6 1047 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 FBXO16Q8IX29 292 aaPredicted RBP13.68□□□□□ -0.22
CLK3-206ENST00000562078 JADE3Q92613 823 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 RILPQ96NA2 401 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 ACAP3Q96P50 834 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 MSTO1Q9BUK6 570 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 MECRQ9BV79 373 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 KLC2Q9H0B6 622 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 RBAKQ9NYW8 714 aaPredicted RBP13.68□□□□□ -0.22
CLK3-206ENST00000562078 STYXL1Q9Y6J8 313 aa13.68□□□□□ -0.22
CLK3-206ENST00000562078 CCDC162PA2VCL2 907 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 ASB14A6NK59 587 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 NOP56O00567 594 aaKnown RBP13.67□□□□□ -0.22
CLK3-206ENST00000562078 PIGRP01833 764 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 HLA-DRAP01903 254 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 DHRS4L1P0CG22 281 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 KLRC2P26717 231 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 C21orf59P57076 290 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 SREBF2Q12772 1141 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 SEPT6Q14141 434 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 TFDP1Q14186 410 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 SEZ6Q53EL9 994 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 TDRD10Q5VZ19 366 aaKnown RBP13.67□□□□□ -0.22
CLK3-206ENST00000562078 CES4AQ5XG92 561 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 NIPAL1Q6NVV3 410 aa13.67□□□□□ -0.22
CLK3-206ENST00000562078 VASH1Q7L8A9 365 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms