RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 ZBTB8BQ8NAP8 495 aaPredicted RBP2.69□□□□□ -1.98
SPG11-223ENST00000560858 TRIM58Q8NG06 486 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 AFAP1L1Q8TED9 768 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 P2RX5Q93086 422 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 JAKMIP2Q96AA8 810 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 NSUN4Q96CB9 384 aaKnown RBP2.69□□□□□ -1.98
SPG11-223ENST00000560858 DHTKD1Q96HY7 919 aaPredicted RBP2.69□□□□□ -1.98
SPG11-223ENST00000560858 CNOT6LQ96LI5 555 aaKnown RBP2.69□□□□□ -1.98
SPG11-223ENST00000560858 MMS19Q96T76 1030 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 NUP88Q99567 741 aaPredicted RBP2.69□□□□□ -1.98
SPG11-223ENST00000560858 CHP1Q99653 195 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 SH3GL2Q99962 352 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 C7orf25Q9BPX7 421 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 SLF1Q9BQI6 1058 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 RHOXF2Q9BQY4 288 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 TUBGCP2Q9BSJ2 902 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 PAGR1Q9BTK6 254 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 MRI1Q9BV20 369 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 NUP58Q9BVL2 599 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 SELENOOQ9BVL4 669 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 CRNKL1Q9BZJ0 848 aaKnown RBP2.69□□□□□ -1.98
SPG11-223ENST00000560858 TRIM9Q9C026 710 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 VPS16Q9H269 839 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 BLZF1Q9H2G9 400 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 TMEM60Q9H2L4 133 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 SH2D4AQ9H788 454 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 ZSWIM4Q9H7M6 989 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 FAM204AQ9H8W3 233 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 ZCCHC17Q9NP64 241 aaKnown RBP2.69□□□□□ -1.98
SPG11-223ENST00000560858 ATP8A2Q9NTI2 1148 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 TCP11L1Q9NUJ3 509 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 EXOC1Q9NV70 894 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 GNL3LQ9NVN8 582 aaKnown RBP2.69□□□□□ -1.98
SPG11-223ENST00000560858 ZNHIT6Q9NWK9 470 aaKnown RBP2.69□□□□□ -1.98
SPG11-223ENST00000560858 VPS18Q9P253 973 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 TRIM10Q9UDY6 481 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 LCMT1Q9UIC8 334 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 SNX12Q9UMY4 172 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 SIK3Q9Y2K2 1263 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 LUC7L2Q9Y383 392 aaKnown RBP2.69□□□□□ -1.98
SPG11-223ENST00000560858 SAR1BQ9Y6B6 198 aa2.69□□□□□ -1.98
SPG11-223ENST00000560858 SPATA31A1Q5TZJ5 1347 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 SIP14410 1827 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 PARP14Q460N5 1801 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 hCG_1642624A0A1W2PR95 340 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 FAM221BA6H8Z2 402 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 UNCXA6NJT0 531 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 SRRM3A6NNA2 597 aaPredicted RBP2.68□□□□□ -1.98
SPG11-223ENST00000560858 B4DLN1 442 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 PPP6CO00743 305 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 CYTH3O43739 400 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 NMT2O60551 498 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 GAS7O60861 476 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 TACC1O75410 805 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 OR52Z1P0C646 297 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 JMJD7P0C870 316 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 MYBP10242 640 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 CYP2D6P10635 497 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 EPB41P11171 864 aaKnown RBP2.68□□□□□ -1.98
SPG11-223ENST00000560858 KRT10P13645 584 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 VEGFAP15692 232 aaPredicted RBP2.68□□□□□ -1.98
SPG11-223ENST00000560858 TCP1P17987 556 aaKnown RBP2.68□□□□□ -1.98
SPG11-223ENST00000560858 TRIM21P19474 475 aaKnown RBP2.68□□□□□ -1.98
SPG11-223ENST00000560858 ATP2B1P20020 1258 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 SMARCA1P28370 1054 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 PRDX5P30044 214 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 GYG1P46976 350 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 GYS2P54840 703 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 NLRP5P59047 1200 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 MECOMQ03112 1051 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 UBXN1Q04323 297 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 LRRC63Q05C16 580 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 C2orf54Q08AI8 447 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 SP140Q13342 867 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 ITPK1Q13572 414 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 GEN1Q17RS7 908 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 ASTE1Q2TB18 679 aaPredicted RBP2.68□□□□□ -1.98
SPG11-223ENST00000560858 ZCWPW2Q504Y3 356 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 HSP90B2PQ58FF3 399 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 PITRM1Q5JRX3 1037 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 SLC10A5Q5PT55 438 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 HYIQ5T013 277 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 CCDC122Q5T0U0 273 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 PXDC1Q5TGL8 231 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 EMC10Q5UCC4 262 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 HAUS3Q68CZ6 603 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 CDCA2Q69YH5 1023 aaPredicted RBP2.68□□□□□ -1.98
SPG11-223ENST00000560858 CENPPQ6IPU0 288 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 SLC18B1Q6NT16 456 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 PDXDC1Q6P996 788 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 EMBQ6PCB8 327 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 CCNI2Q6ZMN8 369 aaPredicted RBP2.68□□□□□ -1.98
SPG11-223ENST00000560858 C15orf52Q6ZUT6 534 aaKnown RBP2.68□□□□□ -1.98
SPG11-223ENST00000560858 KIAA1328Q86T90 577 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 RASAL3Q86YV0 1011 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 CERS3Q8IU89 383 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 ANKRD18AQ8IVF6 992 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 CD302Q8IX05 232 aa2.68□□□□□ -1.98
SPG11-223ENST00000560858 ZC3H3Q8IXZ2 948 aaKnown RBP2.68□□□□□ -1.98
SPG11-223ENST00000560858 EFCAB13Q8IY85 973 aa2.68□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms