RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TOX2Q96NM4 488 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 HNRNPABQ99729 332 aaKnown RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 PLCD4Q9BRC7 762 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 TRIM62Q9BVG3 475 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CINPQ9BW66 212 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 STRA6Q9BX79 667 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 ABCG8Q9H221 673 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 MFSD1Q9H3U5 465 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CNOT1A5YKK6 2376 aaKnown RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 ARHGAP42A6NI28 874 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 PDE2AO00408 941 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 RGS16O15492 202 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 SOD2P04179 222 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 BMPR1AP36894 532 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 VIPR2P41587 438 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 GYS2P54840 703 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 JAM2P57087 298 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 USP46P62068 366 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 LMNB2Q03252 620 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 GBE1Q04446 702 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 RAD51Q06609 339 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 POLD3Q15054 466 aaPredicted RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 TEAD2Q15562 447 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 C2orf27AQ580R0 203 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 TMEM240Q5SV17 173 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 ALS2CLQ60I27 953 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 PCGF5Q86SE9 256 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 JAMLQ86YT9 394 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 TTC13Q8NBP0 860 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 OR7D4Q8NG98 312 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 ZNF461Q8TAF7 563 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 KBTBD7Q8WVZ9 684 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CASP10Q92851 521 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CASD1Q96PB1 797 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CNGB3Q9NQW8 809 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CWC15Q9P013 229 aaKnown RBP5.62□□□□□ -1.51
VPS13C-209ENST00000560637 CYTH4Q9UIA0 394 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 TBX21Q9UL17 535 aa5.62□□□□□ -1.51
VPS13C-209ENST00000560637 EXOC1LA0A1B0GW35 172 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 C2orf78A6NCI8 922 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 DYNC1I1O14576 645 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 NDC80O14777 642 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 CLGNO14967 610 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 TBC1D4O60343 1298 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 SLC2A3P11169 496 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 ZNF143P52747 638 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 DAOAP59103 153 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 POU6F1Q14863 301 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 KYNUQ16719 465 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 RABGAP1LQ5R372 815 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 STXBP5Q5T5C0 1151 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 FBXO38Q6PIJ6 1188 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 VSTM1Q6UX27 236 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 HDXQ7Z353 690 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 CDKL3Q8IVW4 592 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 ATL2Q8NHH9 583 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 TFB1MQ8WVM0 346 aaKnown RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 SYNDIG1Q9H7V2 258 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 DPP7Q9UHL4 492 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 CUL9Q8IWT3 2517 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 TRIP12Q14669 1992 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 C3orf70A6NLC5 250 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 TGM5O43548 720 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 CAND2O75155 1236 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 VIMP08670 466 aaKnown RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 MX2P20592 715 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 WARSP23381 471 aaKnown RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 MLLT1Q03111 559 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 BRD3Q15059 726 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 PDK1Q15118 436 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 RD3Q7Z3Z2 195 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 CCDC13Q8IYE1 715 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 PDCD7Q8N8D1 485 aaKnown RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 SH3RF2Q8TEC5 729 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 MYLIPQ8WY64 445 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 SLC9A7Q96T83 725 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 DDX50Q9BQ39 737 aaKnown RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 NMUR1Q9HB89 426 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 PIGVQ9NUD9 493 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 HAUS2Q9NVX0 235 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 BFARQ9NZS9 450 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 UXTQ9UBK9 157 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 R3HDM2Q9Y2K5 976 aaKnown RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 INSL5Q9Y5Q6 135 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 TMEM191CA6NGB0 347 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 CCDC188H7C350 402 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 BANF1O75531 89 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 C1RP00736 705 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 CD72P21854 359 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 KDELR1P24390 212 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 ITGA8P53708 1063 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 ADAM17P78536 824 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 OGDHQ02218 1023 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 COL9A2Q14055 689 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 ZKSCAN8Q15776 578 aaPredicted RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 FNDC3BQ53EP0 1204 aaKnown RBP5.61□□□□□ -1.51
VPS13C-209ENST00000560637 MEI1Q5TIA1 1274 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 TRIM68Q6AZZ1 485 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 SERPINA13PQ6UXR4 307 aa5.61□□□□□ -1.51
VPS13C-209ENST00000560637 PRR23CQ6ZRP0 262 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms