RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SYT13Q7L8C5 426 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 DAAM2Q86T65 1068 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 TMEM110Q86TL2 294 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 SCN4BQ8IWT1 228 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 C3orf20Q8ND61 904 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 ZNF564Q8TBZ8 553 aaPredicted RBP12.29□□□□□ -0.44
LDLR-212ENST00000560467 KCTD13Q8WZ19 329 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 CD101Q93033 1021 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 CEP295NLQ96MC4 621 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 CYP2S1Q96SQ9 504 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 NCAPGQ9BPX3 1015 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 ZSWIM1Q9BR11 485 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 SLC4A5Q9BY07 1137 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 PACSIN1Q9BY11 444 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 PNPLA8Q9NP80 782 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 DUS2Q9NX74 493 aaKnown RBP12.29□□□□□ -0.44
LDLR-212ENST00000560467 IP6K2Q9UHH9 426 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 DNAI1Q9UI46 699 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 NENFQ9UMX5 172 aa12.29□□□□□ -0.44
LDLR-212ENST00000560467 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.29□□□□□ -0.44
LDLR-212ENST00000560467 NUP210Q8TEM1 1887 aaPredicted RBP12.29□□□□□ -0.44
LDLR-212ENST00000560467 BCLAF3A2AJT9 711 aaKnown RBP12.28□□□□□ -0.44
LDLR-212ENST00000560467 ANTXRLA6NF34 631 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 SIGLEC16A6NMB1 481 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 C1QTNF9BB2RNN3 333 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 GOLGA8SH3BPF8 625 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 CLDN5O00501 218 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 BUB1O43683 1085 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 MOCS3O95396 460 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 CKMP06732 381 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 C1QTNF9P0C862 333 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 GBP1P32455 592 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 SSR1P43307 286 aaKnown RBP12.28□□□□□ -0.44
LDLR-212ENST00000560467 GABRB2P47870 512 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 MAMLD1Q13495 774 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 TUBB2AQ13885 445 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 EML3Q32P44 896 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 FBXO43Q4G163 708 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 FAM102AQ5T9C2 384 aaPredicted RBP12.28□□□□□ -0.44
LDLR-212ENST00000560467 PMF1Q6P1K2 205 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 PIGZQ86VD9 579 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 TTC30AQ86WT1 665 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 SCUBE3Q8IX30 993 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 ARHGAP18Q8N392 663 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 WDTC1Q8N5D0 677 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 OSCP1Q8WVF1 389 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 ACDQ96AP0 544 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 PKMYT1Q99640 499 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 TUBB2BQ9BVA1 445 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 TPSD1Q9BZJ3 242 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 FBXO44Q9H4M3 255 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 TMEM51Q9NW97 253 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 EBF1Q9UH73 591 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 ANAPC7Q9UJX3 599 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 JRKLQ9Y4A0 524 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 DUSP10Q9Y6W6 482 aa12.28□□□□□ -0.44
LDLR-212ENST00000560467 KIF26AQ9ULI4 1882 aaPredicted RBP12.27□□□□□ -0.44
LDLR-212ENST00000560467 TRAV19A0A0A6YYK7 116 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 LNP1A1A4G5 178 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 FAM170AA1A519 330 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 C2orf78A6NCI8 922 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 RCCD1A6NED2 376 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 E5RJQ4 531 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 CAPN9O14815 690 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 SPOPO43791 374 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 RNF8O76064 485 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 MTA2O94776 668 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 RHOBTB1O94844 696 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 RTN3O95197 1032 aaPredicted RBP12.27□□□□□ -0.45
LDLR-212ENST00000560467 PROS1P07225 676 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 GLI1P08151 1106 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 SPINK2P20155 84 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 BCKDHBP21953 392 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 SCNN1AP37088 669 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 SLC1A1P43005 524 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 IFNAR2P48551 515 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 TKTL1P51854 596 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 DGKEP52429 567 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 HADHBP55084 474 aaKnown RBP12.27□□□□□ -0.45
LDLR-212ENST00000560467 SEC13P55735 322 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 RNASE9P60153 205 aaKnown RBP12.27□□□□□ -0.45
LDLR-212ENST00000560467 SLC6A3Q01959 620 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 ZNF252P-AS1Q0IIN9 211 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 PIGHQ14442 188 aaPredicted RBP12.27□□□□□ -0.45
LDLR-212ENST00000560467 MESDQ14696 234 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 PTPN20Q4JDL3 420 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 PKDCCQ504Y2 493 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 PLEKHA7Q6IQ23 1121 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 SYT10Q6XYQ8 523 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 CLEC20AQ6ZU45 233 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 NYAP1Q6ZVC0 841 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 PEX26Q7Z412 305 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 UBL4BQ8N7F7 174 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 TSTD1Q8NFU3 115 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 SH3RF2Q8TEC5 729 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 ATP2A3Q93084 1043 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 C8orf48Q96LL4 319 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 CPXM1Q96SM3 734 aa12.27□□□□□ -0.45
LDLR-212ENST00000560467 NAPGQ99747 312 aaPredicted RBP12.27□□□□□ -0.45
LDLR-212ENST00000560467 CSNK1G1Q9HCP0 422 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms