RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RASSF1Q9NS23 344 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 BLOC1S4Q9NUP1 217 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 KCTD5Q9NXV2 234 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 NDUFAF4Q9P032 175 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 CCNL1Q9UK58 526 aaPredicted RBP1.85□□□□□ -2.11
USP3-209ENST00000558925 CNPY2Q9Y2B0 182 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 DERAQ9Y315 318 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 PCDHA10Q9Y5I2 948 aa1.85□□□□□ -2.11
USP3-209ENST00000558925 UTP18Q9Y5J1 556 aaKnown RBP eCLIP1.85□□□□□ -2.11
USP3-209ENST00000558925 GAGE12BA1L429 117 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 A6NCN8 305 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 GAGE12HA6NDE8 117 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 EFCAB8A8MWE9 144 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 GRM8O00222 908 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 PEX12O00623 359 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 CES2O00748 559 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 YY2O15391 372 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 PROM1O43490 865 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 PMPCBO75439 489 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 RNASEH2AO75792 299 aaKnown RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 TFRCP02786 760 aaKnown RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 EGR2P11161 476 aaPredicted RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 CREB1P16220 341 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 ZFXP17010 805 aaPredicted RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 LAG3P18627 525 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 CD72P21854 359 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 ABCD3P28288 659 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 GKP32189 559 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 PTGS2P35354 604 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 DIO1P49895 249 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 CCT4P50991 539 aaKnown RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 PDE1AP54750 535 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 TPTEP56180 551 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 FOXL2P58012 376 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 TAS2R50P59544 299 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 ITIH3Q06033 890 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 FOXF2Q12947 444 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 SEMA3BQ13214 749 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 GAB1Q13480 694 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 DCTN1Q14203 1278 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 KCNJ12Q14500 433 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 TOMM20Q15388 145 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 GPR162Q16538 588 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 TSTQ16762 297 aaKnown RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 FAM187BQ17R55 369 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 TIGD2Q4W5G0 525 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 SLC45A4Q5BKX6 768 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 HYIQ5T013 277 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 STRIP1Q5VSL9 837 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 FAAH2Q6GMR7 532 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 Q6ZWC4 215 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 H1FNTQ75WM6 255 aaPredicted RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 PEG10Q86TG7 708 aaKnown RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 CHD1LQ86WJ1 897 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 LNX2Q8N448 690 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 TCP11L2Q8N4U5 519 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 DDX51Q8N8A6 666 aaKnown RBP eCLIP1.84□□□□□ -2.11
USP3-209ENST00000558925 Q8N9P0 234 aaPredicted RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 ANKRD52Q8NB46 1076 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 SLC2A12Q8TD20 617 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 TBC1D22AQ8WUA7 517 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 FUBP1Q96AE4 644 aaKnown RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 SDCCAG3Q96C92 435 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 MYEOVQ96EZ4 313 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 FBXL20Q96IG2 436 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 PBKQ96KB5 322 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 MACROD1Q9BQ69 325 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 LBHD1Q9BQE6 289 aaPredicted RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 CHCHD6Q9BRQ6 235 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 ELOVL1Q9BW60 279 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 WDR11Q9BZH6 1224 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 TOR3AQ9H497 397 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 MROH8Q9H579 483 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 ACAD9Q9H845 621 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 KCNK9Q9NPC2 374 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 LIN7CQ9NUP9 197 aaKnown RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 FBXO28Q9NVF7 368 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 EHD3Q9NZN3 535 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 NKX1-2Q9UD57 310 aaPredicted RBP1.84□□□□□ -2.11
USP3-209ENST00000558925 AASSQ9UDR5 926 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 SLC12A4Q9UP95 1085 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 AFG3L2Q9Y4W6 797 aa1.84□□□□□ -2.11
USP3-209ENST00000558925 SALL3Q9BXA9 1300 aa1.84□□□□□ -2.12
USP3-209ENST00000558925 LMTK3Q96Q04 1460 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3DA0A087WVF3 549 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3IA0A087WXS9 549 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3EA0A087X179 549 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3KA0A087X1G2 549 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 A0A1W2PPH5 198 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3BA6NDS4 549 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3FA6NER0 549 aaPredicted RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 MBD3L5A6NJ08 208 aaPredicted RBP1.83□□□□□ -2.12
USP3-209ENST00000558925 NPIPB13A6NJU9 1138 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 LINC00473A8K010 186 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 NPIPB5A8MRT5 1133 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 A8MVJ9 347 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 TBC1D3LB9A6J9 549 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 NPIPB4C9JG80 1138 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 H0YIZ8 118 aa1.83□□□□□ -2.12
USP3-209ENST00000558925 IFNL4K9M1U5 179 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms