RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 TYW5A2RUC4 315 aaKnown RBP15.23■□□□□ 0.03
SHMT2-235ENST00000557740 SART1O43290 800 aaKnown RBP15.23■□□□□ 0.03
SHMT2-235ENST00000557740 GABBR2O75899 941 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 FGFR1OPO95684 399 aaKnown RBP15.23■□□□□ 0.03
SHMT2-235ENST00000557740 PABPC1P11940 636 aaKnown RBP15.23■□□□□ 0.03
SHMT2-235ENST00000557740 HLA-EP13747 358 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 OXTRP30559 389 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 TPMTP51580 245 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 MARSP56192 900 aaKnown RBP15.23■□□□□ 0.03
SHMT2-235ENST00000557740 TBX4P57082 545 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 RING1Q06587 406 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 TMEM215Q68D42 235 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 RFWD3Q6PCD5 774 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 FAM149B1Q96BN6 582 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 SERPINB11Q96P15 392 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 DDX50Q9BQ39 737 aaKnown RBP15.23■□□□□ 0.03
SHMT2-235ENST00000557740 SRRTQ9BXP5 876 aaKnown RBP15.23■□□□□ 0.03
SHMT2-235ENST00000557740 ITM2CQ9NQX7 267 aa15.23■□□□□ 0.03
SHMT2-235ENST00000557740 UPK3BL1B0FP48 263 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 UPK3BL2E5RIL1 263 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 IRAK2O43187 625 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 TBL1XO60907 577 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 GADD45BO75293 160 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-235ENST00000557740 IGLV3-27P01718 113 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 SGSHP51688 502 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 COPAP53621 1224 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 SEMA3BQ13214 749 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 MPP7Q5T2T1 576 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.22■□□□□ 0.03
SHMT2-235ENST00000557740 ZNF557Q8N988 423 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-235ENST00000557740 HJURPQ8NCD3 748 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-235ENST00000557740 CADM4Q8NFZ8 388 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 OR2I1PQ8NGU4 316 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 OR2T3Q8NH03 318 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 CYB5D2Q8WUJ1 264 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 KREMEN1Q96MU8 473 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 TRIM62Q9BVG3 475 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 IRX2Q9BZI1 471 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-235ENST00000557740 MIR1-1HGQ9H1L0 117 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 LHX5Q9H2C1 402 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 NFE2L3Q9Y4A8 694 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 ASCC3Q8N3C0 2202 aaKnown RBP15.22■□□□□ 0.03
SHMT2-235ENST00000557740 CACNA1EQ15878 2313 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 USP24Q9UPU5 2620 aa15.22■□□□□ 0.03
SHMT2-235ENST00000557740 KCNJ18B7U540 433 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 MED7O43513 233 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 ACSL4O60488 711 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 KRT37O76014 449 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 ATP5BP06576 529 aaKnown RBP15.21■□□□□ 0.03
SHMT2-235ENST00000557740 POLR2EP19388 210 aaKnown RBP15.21■□□□□ 0.03
SHMT2-235ENST00000557740 MAOBP27338 520 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 PI4KAP42356 2102 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 ACADSBP45954 432 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 SIM1P81133 766 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-235ENST00000557740 CAMK2GQ13555 558 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-235ENST00000557740 FAM133BQ5BKY9 247 aaKnown RBP15.21■□□□□ 0.03
SHMT2-235ENST00000557740 PIK3R6Q5UE93 754 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 MBLAC2Q68D91 279 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 PIP4P1Q86T03 277 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 ADIPOR2Q86V24 386 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 FAM124AQ86V42 546 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 MFN1Q8IWA4 741 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 CCDC117Q8IWD4 279 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-235ENST00000557740 ZCCHC9Q8N567 271 aaKnown RBP15.21■□□□□ 0.03
SHMT2-235ENST00000557740 ZNF366Q8N895 744 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 DQX1Q8TE96 717 aaKnown RBP15.21■□□□□ 0.03
SHMT2-235ENST00000557740 NUP58Q9BVL2 599 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 FBRSQ9HAH7 460 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 UBE2TQ9NPD8 197 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-235ENST00000557740 STIM2Q9P246 746 aa15.21■□□□□ 0.03
SHMT2-235ENST00000557740 KMT2BQ9UMN6 2715 aaPredicted RBP15.21■□□□□ 0.02
SHMT2-235ENST00000557740 A0A1B0GTW7 788 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 GOLGA6L7A0A1B0GV03 622 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 CAPN9O14815 690 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 THAP12O43422 761 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 LETM1O95202 739 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-235ENST00000557740 MOCS2O96007 188 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-235ENST00000557740 IGLV3-19P01714 112 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 DLDP09622 509 aaKnown RBP15.2■□□□□ 0.02
SHMT2-235ENST00000557740 SLC6A4P31645 630 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 GPD2P43304 727 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 GRIK2Q13002 908 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 NNTQ13423 1086 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 MEA1Q16626 185 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 DCAF12L1Q5VU92 463 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 NADSYN1Q6IA69 706 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 DENND1BQ6P3S1 775 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 ENOSF1Q7L5Y1 443 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 CREBRFQ8IUR6 639 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 SCUBE3Q8IX30 993 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 WFDC5Q8TCV5 224 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 SNX19Q92543 992 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 AZIN2Q96A70 460 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 ZDHHC5Q9C0B5 715 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 TMEM245Q9H330 911 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 DNAAF2Q9NVR5 837 aaKnown RBP15.2■□□□□ 0.02
SHMT2-235ENST00000557740 CNTN6Q9UQ52 1028 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 TLR6Q9Y2C9 796 aa15.2■□□□□ 0.02
SHMT2-235ENST00000557740 SPAARA0A1B0GVQ0 90 aa15.19■□□□□ 0.02
SHMT2-235ENST00000557740 APOEP02649 317 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms