RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 TACC1O75410 805 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 KRT13P13646 458 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 PTPN1P18031 435 aaKnown RBP13.13□□□□□ -0.31
SHMT2-230ENST00000557427 NDUFV2P19404 249 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 PSMC2P35998 433 aaKnown RBP13.13□□□□□ -0.31
SHMT2-230ENST00000557427 GRIA2P42262 883 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 ARHGAP25P42331 645 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 WASP42768 502 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 TNFRSF4P43489 277 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 GCLMP48507 274 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 VAMP7P51809 220 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 CLDN10P78369 228 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 KCNH2Q12809 1159 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 SGSM1Q2NKQ1 1148 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 ZNF667Q5HYK9 610 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 C1orf220Q5T0J3 134 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 SCARA5Q6ZMJ2 495 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 C4orf50Q6ZRC1 276 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 SV2AQ7L0J3 742 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 FAM186BQ8IYM0 893 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 MYCBPAPQ8TBZ2 947 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 TMEM174Q8WUU8 243 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 BAP1Q92560 729 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 ZDHHC5Q9C0B5 715 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 SLC6A17Q9H1V8 727 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 DPEP3Q9H4B8 488 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 GAREM1Q9H706 876 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 SMYD3Q9H7B4 428 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 ABCB6Q9NP58 842 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 ARHGEF4Q9NR80 690 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 TM7SF3Q9NS93 570 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 DNMT3LQ9UJW3 386 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 REXO2Q9Y3B8 237 aaKnown RBP13.13□□□□□ -0.31
SHMT2-230ENST00000557427 COL6A6A6NMZ7 2263 aa13.13□□□□□ -0.31
SHMT2-230ENST00000557427 KNTC1P50748 2209 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 GTPBP10A4D1E9 387 aaKnown RBP13.12□□□□□ -0.31
SHMT2-230ENST00000557427 EPHB6O15197 1021 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 FANCGO15287 622 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 CILPO75339 1184 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 AFPP02771 609 aaKnown RBP13.12□□□□□ -0.31
SHMT2-230ENST00000557427 FAM163BP0C2L3 166 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 ZNF883P0CG24 379 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 TRIM49P0CI25 452 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 TRIM49CP0CI26 452 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 EIF2DP41214 584 aaKnown RBP13.12□□□□□ -0.31
SHMT2-230ENST00000557427 MAPRE1Q15691 268 aaKnown RBP13.12□□□□□ -0.31
SHMT2-230ENST00000557427 PTPRNQ16849 979 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 SPOPLQ6IQ16 392 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 GPR155Q7Z3F1 870 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 RHBDD1Q8TEB9 315 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 PCED1BQ96HM7 432 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 WDR24Q96S15 920 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 SEMA4CQ9C0C4 833 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 RNF38Q9H0F5 515 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 HAUS4Q9H6D7 363 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 NHEJ1Q9H9Q4 299 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-230ENST00000557427 LZTFL1Q9NQ48 299 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 PLCB1Q9NQ66 1216 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 FAM207AQ9NSI2 230 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-230ENST00000557427 UXTQ9UBK9 157 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-230ENST00000557427 SUSD2Q9UGT4 822 aa13.12□□□□□ -0.31
SHMT2-230ENST00000557427 PIEZO2Q9H5I5 2752 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 TEX51A0A1B0GUA7 166 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 CLDN5O00501 218 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 IPO7O95373 1038 aaKnown RBP13.11□□□□□ -0.31
SHMT2-230ENST00000557427 LCA5LO95447 670 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 STAU1O95793 577 aaKnown RBP13.11□□□□□ -0.31
SHMT2-230ENST00000557427 HLA-DRAP01903 254 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 HLA-EP13747 358 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 HOXB2P14652 356 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 GNSP15586 552 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 CLDN6P56747 220 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 KCNC4Q03721 635 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 PPP3CAQ08209 521 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 MAPK8IP2Q13387 824 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-230ENST00000557427 TUBB2AQ13885 445 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 HLA-BQ31612 363 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 ZACNQ401N2 412 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 CFAP221Q4G0U5 840 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 DHRS13Q6UX07 377 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 INTS8Q75QN2 995 aaKnown RBP13.11□□□□□ -0.31
SHMT2-230ENST00000557427 MTERF4Q7Z6M4 381 aaKnown RBP13.11□□□□□ -0.31
SHMT2-230ENST00000557427 ZNF513Q8N8E2 541 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-230ENST00000557427 DNASE2BQ8WZ79 361 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 ANKRD7Q92527 254 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 FUBP3Q96I24 572 aaKnown RBP eCLIP13.11□□□□□ -0.31
SHMT2-230ENST00000557427 ACOX2Q99424 681 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 CDC6Q99741 560 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 MED10Q9BTT4 135 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 TUBB2BQ9BVA1 445 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 SDCBP2Q9H190 292 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.11□□□□□ -0.31
SHMT2-230ENST00000557427 COL12A1Q99715 3063 aa13.11□□□□□ -0.31
SHMT2-230ENST00000557427 COL5A1P20908 1838 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-230ENST00000557427 KNL1Q8NG31 2342 aa13.1□□□□□ -0.31
SHMT2-230ENST00000557427 PTPN13Q12923 2485 aa13.1□□□□□ -0.31
SHMT2-230ENST00000557427 A0A1B0GTW7 788 aa13.1□□□□□ -0.31
SHMT2-230ENST00000557427 SSU72P8A0A1W2PR75 194 aa13.1□□□□□ -0.31
SHMT2-230ENST00000557427 LRRC53A6NM62 1247 aa13.1□□□□□ -0.31
SHMT2-230ENST00000557427 E9PAM4 449 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms