RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ABCA3Q99758 1704 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 PNMA6FA0A0J9YX94 578 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 MAN1A2O60476 641 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 RFPL2O75678 378 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 DBTP11182 482 aaKnown RBP14.18□□□□□ -0.14
SHMT2-226ENST00000556825 ITGAXP20702 1163 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 GRIA3P42263 894 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 HADHBP55084 474 aaKnown RBP14.18□□□□□ -0.14
SHMT2-226ENST00000556825 PPP4CP60510 307 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 DEFB107AQ8IZN7 70 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 ABHD11Q8NFV4 315 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 LNX1Q8TBB1 728 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-226ENST00000556825 JPH3Q8WXH2 748 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-226ENST00000556825 TOE1Q96GM8 510 aaKnown RBP14.18□□□□□ -0.14
SHMT2-226ENST00000556825 PKP2Q99959 881 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 C12orf65Q9H3J6 166 aaKnown RBP14.18□□□□□ -0.14
SHMT2-226ENST00000556825 LIN7BQ9HAP6 207 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 TRIM64A6NGJ6 449 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 FAM189A1O60320 539 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 ATF6P18850 670 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 MAN1A1P33908 653 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 KRT20P35900 424 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 GRIK1P39086 918 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 SRP54P61011 504 aaKnown RBP14.18□□□□□ -0.14
SHMT2-226ENST00000556825 HERC3Q15034 1050 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 TAF5Q15542 800 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 MAPRE2Q15555 327 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 VPS72Q15906 364 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 RSBN1Q5VWQ0 802 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-226ENST00000556825 SLC22A16Q86VW1 577 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 ZFPM1Q8IX07 1006 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 LHFPL5Q8TAF8 219 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 S100ZQ8WXG8 99 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 ARHGEF26Q96DR7 871 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 C17orf62Q9BQA9 187 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 DNAI2Q9GZS0 605 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 CYP4F11Q9HBI6 524 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 AKIP1Q9NQ31 210 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 ENPP5Q9UJA9 477 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 RIMKLBQ9ULI2 386 aa14.18□□□□□ -0.14
SHMT2-226ENST00000556825 CAB39Q9Y376 341 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-226ENST00000556825 V9GY48 417 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-226ENST00000556825 C10orf71Q711Q0 1435 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 FAM155AB1AL88 458 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-226ENST00000556825 TRAF5O00463 557 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 RNASEH2AO75792 299 aaKnown RBP14.17□□□□□ -0.14
SHMT2-226ENST00000556825 ALDH1A2O94788 518 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 TOMM70O94826 608 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 PAHP00439 452 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 GARTP22102 1010 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 EPHA3P29320 983 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 MLLT3P42568 568 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-226ENST00000556825 HK2P52789 917 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 KCNQ4P56696 695 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 EVA1CP58658 441 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 RHAGQ02094 409 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 FUT2Q10981 343 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 TARDBPQ13148 414 aaKnown RBP eCLIP14.17□□□□□ -0.14
SHMT2-226ENST00000556825 CARTPTQ16568 116 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 C5orf22Q49AR2 442 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 IQSEC1Q6DN90 963 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 GPBP1Q86WP2 473 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 CLYBLQ8N0X4 340 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 GALNT11Q8NCW6 608 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 OR5H6Q8NGV6 325 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 SLC7A3Q8WY07 619 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 FAM89AQ96GI7 184 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 RILPQ96NA2 401 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 GON7Q9BXV9 100 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 ANKRD60Q9BZ19 345 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 VRTNQ9H8Y1 702 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 VPS37BQ9H9H4 285 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 PKD2L1Q9P0L9 805 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 COG5Q9UP83 839 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 CCDC88AQ3V6T2 1871 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 ATAD5Q96QE3 1844 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 A0A1W2PQ72 361 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 LRRIQ4A6NIV6 560 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 SDR42E2A6NKP2 422 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 UGT2B4P06133 528 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 GFAPP14136 432 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 CENPAP49450 140 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 AQP5P55064 265 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 POLR2GP62487 172 aaKnown RBP eCLIP14.17□□□□□ -0.14
SHMT2-226ENST00000556825 NFE2L1Q14494 772 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 UBE2SQ16763 222 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 MGAT5BQ3V5L5 792 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 TRAPPC3LQ5T215 181 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 TRIM72Q6ZMU5 477 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 KIAA0408Q6ZU52 694 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 ATG9AQ7Z3C6 839 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 ADGRG5Q8IZF4 528 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 TMEM102Q8N9M5 508 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-226ENST00000556825 APPL2Q8NEU8 664 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 C1orf54Q8WWF1 131 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 CITED4Q96RK1 184 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 TUBA1CQ9BQE3 449 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 TMEM246Q9BRR3 403 aa14.17□□□□□ -0.14
SHMT2-226ENST00000556825 NXF1Q9UBU9 619 aaKnown RBP14.17□□□□□ -0.14
SHMT2-226ENST00000556825 ATP6V1HQ9UI12 483 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms