RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	PRSS16	Q9NQE7	514 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	FTSJ1	Q9UET6	329 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	SERTAD1	Q9UHV2	236 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	PCDHA7	Q9UN72	937 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	NCKAP1	Q9Y2A7	1128 aa		13.22	□□□□□ -0.29
SHMT2-223	ENST00000556689	PTPRB	P23467	1997 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	ACACA	Q13085	2346 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	PLK4	O00444	970 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	VILL	O15195	856 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	PAPSS1	O43252	624 aa	Predicted RBP	13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	ZBED1	O96006	694 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	ATP5B	P06576	529 aa	Known RBP	13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	DLD	P09622	509 aa	Known RBP	13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	CDK4	P11802	303 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	KRT13	P13646	458 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	ME1	P48163	572 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	C21orf59	P57076	290 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	RACK1	P63244	317 aa	Known RBP	13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	IL9R	Q01113	521 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	PPP3CA	Q08209	521 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	TTC31	Q49AM3	519 aa	Predicted RBP	13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	ADGRF1	Q5T601	910 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	RESP18	Q5W5W9	173 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	PM20D1	Q6GTS8	502 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	INTS8	Q75QN2	995 aa	Known RBP	13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	FMNL3	Q8IVF7	1028 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	AHI1	Q8N157	1196 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	TTC39C	Q8N584	583 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	ANKRD52	Q8NB46	1076 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	SKA1	Q96BD8	255 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	PAGE5	Q96GU1	130 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	TMEM176A	Q96HP8	235 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	FAXDC2	Q96IV6	333 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	ACE2	Q9BYF1	805 aa	Predicted RBP	13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	OLA1	Q9NTK5	396 aa	Known RBP	13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	ABCB8	Q9NUT2	735 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	TRAF3IP3	Q9Y228	551 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	HBS1L	Q9Y450	684 aa	Known RBP	13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	PCDHGA1	Q9Y5H4	931 aa		13.21	□□□□□ -0.29
SHMT2-223	ENST00000556689	BPTF	Q12830	3046 aa		13.21	□□□□□ -0.3
SHMT2-223	ENST00000556689	MYH10	P35580	1976 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689		A0A1B0GTQ1	180 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	TK2	O00142	265 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	ZIC2	O95409	532 aa	Predicted RBP	13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	LDOC1	O95751	146 aa	Predicted RBP	13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	TRIM49	P0CI25	452 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	TRIM49C	P0CI26	452 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	PABPC1	P11940	636 aa	Known RBP	13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	POLR2E	P19388	210 aa	Known RBP	13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	TKTL1	P51854	596 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	ENPEP	Q07075	957 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	C6orf118	Q5T5N4	469 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	MBLAC2	Q68D91	279 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	ZNF776	Q68DI1	518 aa	Predicted RBP	13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	ARHGAP17	Q68EM7	881 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	KIAA0895L	Q68EN5	471 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	SLC4A11	Q8NBS3	891 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	PIP4K2C	Q8TBX8	421 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	ADAM32	Q8TC27	787 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	GANC	Q8TET4	914 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	RNF139	Q8WU17	664 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	NDRG1	Q92597	394 aa	Known RBP	13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	ORAI3	Q9BRQ5	295 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	ULBP1	Q9BZM6	244 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	MMRN2	Q9H8L6	949 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	CISH	Q9NSE2	258 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	SFMBT1	Q9UHJ3	866 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	GGA2	Q9UJY4	613 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	STOML2	Q9UJZ1	356 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	SCML1	Q9UN30	329 aa		13.2	□□□□□ -0.3
SHMT2-223	ENST00000556689	APC2	O95996	2303 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	ASXL3	Q9C0F0	2248 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689		A0A1W2PPC4	97 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	FAM47DP	A6NHR8	397 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	ENC1	O14682	589 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	LATS1	O95835	1130 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	IGHV4-34	P06331	123 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	ITGAV	P06756	1048 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	C1S	P09871	688 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	NR2F2	P24468	414 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	ITPKB	P27987	946 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	HNF1B	P35680	557 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	RAD23B	P54727	409 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	SFSWAP	Q12872	951 aa	Known RBP	13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	NFIL3	Q16649	462 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	PRAMEF14	Q5SWL7	426 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	LRRC69	Q6ZNQ3	347 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	USP30	Q70CQ3	517 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	FAM186B	Q8IYM0	893 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	SLC39A7	Q92504	469 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	NXPE2	Q96DL1	559 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	ELF4	Q99607	663 aa	Predicted RBP	13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	LRRC4	Q9HBW1	653 aa		13.19	□□□□□ -0.3
SHMT2-223	ENST00000556689	TMEM8A	Q9HCN3	771 aa		13.19	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms