RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 DUS2Q9NX74 493 aaKnown RBP9.81□□□□□ -0.84
SIX4-202ENST00000554079 ABI2Q9NYB9 513 aaPredicted RBP9.81□□□□□ -0.84
SIX4-202ENST00000554079 NXF1Q9UBU9 619 aaKnown RBP9.81□□□□□ -0.84
SIX4-202ENST00000554079 DSEQ9UL01 958 aa9.81□□□□□ -0.84
SIX4-202ENST00000554079 PRPF19Q9UMS4 504 aaKnown RBP9.81□□□□□ -0.84
SIX4-202ENST00000554079 EIF3LQ9Y262 564 aaKnown RBP9.81□□□□□ -0.84
SIX4-202ENST00000554079 CACNA1SQ13698 1873 aa9.81□□□□□ -0.84
SIX4-202ENST00000554079 CCDC195A0A1B0GUA6 201 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 TRIM77I1YAP6 450 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 ERVH48-1M5A8F1 160 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 HTRA2O43464 458 aaPredicted RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 DYRK3O43781 588 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 ZMPSTE24O75844 475 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 UGT2B4P06133 528 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 FDX1P10109 184 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 MAP4P27816 1152 aaKnown RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 SSTR1P30872 391 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 ARL1P40616 181 aaPredicted RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 NAMPTP43490 491 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 CASP4P49662 377 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 TMBIM6P55061 237 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 COPZ1P61923 177 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 FLOT2Q14254 428 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 MORF4L2Q15014 288 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 LDLRAP1Q5SW96 308 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 RNASEH2BQ5TBB1 312 aaKnown RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 MAMDC4Q6UXC1 1216 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 SNX29P2Q8IUI4 249 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 TTC30BQ8N4P2 665 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 LRRC59Q96AG4 307 aaKnown RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 CMTM5Q96DZ9 223 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 FAM118BQ9BPY3 351 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 RTKNQ9BST9 563 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 NOL6Q9H6R4 1146 aaKnown RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 ATP13A3Q9H7F0 1226 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 POLR1BQ9H9Y6 1135 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 IFT122Q9HBG6 1241 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 GMIPQ9P107 970 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 SUCOQ9UBS9 1254 aaKnown RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 ENPP5Q9UJA9 477 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 ARHGAP26Q9UNA1 814 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 COL24A1Q17RW2 1714 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 GOLGA8IPA6NC78 632 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 AURKAO14965 403 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 AKAP10O43572 662 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 NMT2O60551 498 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 NOL3O60936 208 aaKnown RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 GPC4O75487 556 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 MYCP01106 439 aaPredicted RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 GSTM1P09488 218 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 COX4I1P13073 169 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 CASP3P42574 277 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 POU6F1Q14863 301 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 PIGGQ5H8A4 983 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 NHSL2Q5HYW2 709 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.8□□□□□ -0.84
SIX4-202ENST00000554079 CIAPIN1Q6FI81 312 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 ZNF746Q6NUN9 644 aaPredicted RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 GADL1Q6ZQY3 521 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 SLC4A11Q8NBS3 891 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 BHLHE22Q8NFJ8 381 aaPredicted RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 OR13F1Q8NGS4 319 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 SDR42E1Q8WUS8 393 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 CELF1Q92879 486 aaKnown RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 NGLY1Q96IV0 654 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 CDHR1Q96JP9 859 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 PCDHB18PQ96TA0 734 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 TMEM121Q9BTD3 319 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 MXD3Q9BW11 206 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 MRPL9Q9BYD2 267 aaKnown RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 GPN2Q9H9Y4 310 aaPredicted RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 HMG20AQ9NP66 347 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 BARHL2Q9NY43 387 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 SERPINB13Q9UIV8 391 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 VPS28Q9UK41 221 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 TESMINQ9Y4I5 508 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 AFG3L2Q9Y4W6 797 aa9.8□□□□□ -0.84
SIX4-202ENST00000554079 AHDC1Q5TGY3 1603 aaPredicted RBP9.8□□□□□ -0.84
SIX4-202ENST00000554079 ASTN1O14525 1302 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 SPATA31A5Q5VU36 1347 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 SPATA31A6Q5VVP1 1343 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 SPATA31A7Q8IWB4 1347 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 CYP2D7A0A087X1C5 515 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 hCG_2039718K7EN88 272 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 ZW10O43264 779 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 ASNA1O43681 348 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 FAM155BO75949 473 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 CPNE6O95741 557 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 ZSCAN5DPP0CG00 497 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 PCP11498 1178 aaKnown RBP9.79□□□□□ -0.84
SIX4-202ENST00000554079 KRT3P12035 628 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 KRT5P13647 590 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 MATN1P21941 496 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 MYF6P23409 242 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 CACNB3P54284 484 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 RACK1P63244 317 aaKnown RBP9.79□□□□□ -0.84
SIX4-202ENST00000554079 MS4A2Q01362 244 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 PRKCEQ02156 737 aa9.79□□□□□ -0.84
SIX4-202ENST00000554079 CACNB1Q02641 598 aaPredicted RBP9.79□□□□□ -0.84
SIX4-202ENST00000554079 DUSP7Q16829 419 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms