RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 MOCS1Q9NZB8 636 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 ADAMTS5Q9UNA0 930 aa5.59□□□□□ -1.51
LIMA1-212ENST00000552491 BCLAF3A2AJT9 711 aaKnown RBP5.59□□□□□ -1.52
LIMA1-212ENST00000552491 WDR27A2RRH5 827 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 TPP1O14773 563 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 APOL1O14791 398 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 MED7O43513 233 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 PRPSAP2O60256 369 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 B4GALT4O60513 344 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 PLIN3O60664 434 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 FARP2O94887 1054 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-212ENST00000552491 ITGB3P05106 788 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 PIM1P11309 404 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-212ENST00000552491 VCLP18206 1134 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 CUL3Q13618 768 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 LAMB3Q13751 1172 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 PRKG1Q13976 671 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 TFDP2Q14188 446 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 KRT81Q14533 505 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 ZNF667Q5HYK9 610 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 PRAMEF18Q5VWM3 479 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 SLC9A4Q6AI14 798 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 OR6B2Q6IFH4 312 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 TIFABQ6ZNK6 161 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 FRMD7Q6ZUT3 714 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 ARCQ7LC44 396 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 SATL1Q86VE3 508 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 C10orf107Q8IVU9 208 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 MCUQ8NE86 351 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 GDPD5Q8WTR4 605 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 TRAPPC12Q8WVT3 735 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 MOCOSQ96EN8 888 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 TMEM176AQ96HP8 235 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 HAPLN3Q96S86 360 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 NDNQ99608 321 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 SIKE1Q9BRV8 207 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 KLC2Q9H0B6 622 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 R3HDMLQ9H3Y0 253 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 MYOZ2Q9NPC6 264 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 NGRNQ9NPE2 291 aaKnown RBP5.59□□□□□ -1.52
LIMA1-212ENST00000552491 DMAP1Q9NPF5 467 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-212ENST00000552491 MTMR10Q9NXD2 777 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 CDH22Q9UJ99 828 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 POMPQ9Y244 141 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 PCDHA11Q9Y5I1 949 aa5.59□□□□□ -1.52
LIMA1-212ENST00000552491 SCN1AP35498 2009 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 SF3B1O75533 1304 aaKnown RBP eCLIP5.58□□□□□ -1.523e-6■■■■■ 137.9
LIMA1-212ENST00000552491 LACTBL1A8MY62 500 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 GPR25O00155 361 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 ZBTB14O43829 449 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 TNNC2P02585 160 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 PABPC4LP0CB38 370 aaKnown RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 SMIM18P0DKX4 95 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 UQCRBP14927 111 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 ICAM3P32942 547 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 TCF7P36402 384 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 STAT5BP51692 787 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 COPAP53621 1224 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 HDAC4P56524 1084 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 NIPAL4Q0D2K0 466 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 LSAMPQ13449 338 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 GRM2Q14416 872 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 SURF1Q15526 300 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 PPP6R3Q5H9R7 873 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 FAM47CQ5HY64 1035 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 PMF1Q6P1K2 205 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 UGT2A3Q6UWM9 527 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 MPZL3Q6UWV2 235 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 EEPD1Q7L9B9 569 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 NCAPG2Q86XI2 1143 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 DEFB107AQ8IZN7 70 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 DEPDC1BQ8WUY9 529 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 EZH1Q92800 747 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 LRRC39Q96DD0 335 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 ANKRD36BP1Q96IX9 119 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 HEXIM2Q96MH2 286 aaKnown RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 B3GNT5Q9BYG0 378 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 CDT1Q9H211 546 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 RNPEPQ9H4A4 650 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 ACAD9Q9H845 621 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 GBA2Q9HCG7 927 aaPredicted RBP5.58□□□□□ -1.52
LIMA1-212ENST00000552491 MAN1C1Q9NR34 630 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 TMEM216Q9P0N5 145 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 SLC4A7Q9Y6M7 1214 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 BPTFQ12830 3046 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 MYOCOSA0A1B0GUC4 107 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 OPHN1O60890 802 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 KLHL2O95198 593 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 PGM3O95394 542 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 APBA3O96018 575 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 VAV1P15498 845 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 RAG1P15918 1043 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 TGM2P21980 687 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 EFNA5P52803 228 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 NDST1P52848 882 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 USP4Q13107 963 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 MED21Q13503 144 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 OLIG2Q13516 323 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 GK3PQ14409 553 aa5.58□□□□□ -1.52
LIMA1-212ENST00000552491 TLR1Q15399 786 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms