RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RRP7AQ9Y3A4 280 aaKnown RBP4.66□□□□□ -1.66
VPS29-205ENST00000548539 CCDC187A0A096LP49 1063 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 LOC105369274A0A096LPK9 316 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 LOC102723532A0A0G2JNH3 316 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 A0A1B0GVC2 190 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 GXYLT2A0PJZ3 443 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 AGAP5A6NIR3 686 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 H0YIZ8 118 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 STX16-NPEPL1H3BU86 382 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 QSOX1O00391 747 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 STX16O14662 325 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 KCNAB3O43448 404 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 LARGE1O95461 756 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 DLDP09622 509 aaKnown RBP4.65□□□□□ -1.67
VPS29-205ENST00000548539 ELFN1P0C7U0 828 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 NDUFB7P17568 137 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 DIO1P49895 249 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 SMAD1Q15797 465 aaKnown RBP4.65□□□□□ -1.67
VPS29-205ENST00000548539 AAK1Q2M2I8 961 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 NBPF8Q3BBV2 869 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 PLAC9Q5JTB6 97 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 KIAA0895LQ68EN5 471 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 DGAT2L7PQ6IED9 249 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 KIRREL2Q6UWL6 708 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 OR4N4Q8N0Y3 316 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.65□□□□□ -1.67
VPS29-205ENST00000548539 ACTRT2Q8TDY3 377 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 HERVK_113Q902F9 699 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 PDLIM2Q96JY6 352 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 PAAF1Q9BRP4 392 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 TWSG1Q9GZX9 223 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 ABHD16BQ9H3Z7 469 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 PRDM16Q9HAZ2 1276 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 ASB6Q9NWX5 421 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 AMFRQ9UKV5 643 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 ZBTB1Q9Y2K1 713 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 DERAQ9Y315 318 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 PCDHA10Q9Y5I2 948 aa4.65□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3DA0A087WVF3 549 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3IA0A087WXS9 549 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3EA0A087X179 549 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3KA0A087X1G2 549 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3BA6NDS4 549 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3FA6NER0 549 aaPredicted RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 FAM90A20PA6NIJ5 464 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3LB9A6J9 549 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 EPB41L2O43491 1005 aaKnown RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 TMPRSS11DO60235 418 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 PRAMEF2O60811 474 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 HEXIM1O94992 359 aaKnown RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 TTLL1O95922 423 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 NPSP0C0P6 89 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3HP0C7X1 549 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TMIGD3P0DMS9 266 aaPredicted RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 TNFAIP3P21580 790 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 IGHMBP2P38935 993 aaKnown RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 TUBP50607 506 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 RPL15P61313 204 aaKnown RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 RAE1P78406 368 aaKnown RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 TXNL4AP83876 142 aaKnown RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 UBE3AQ05086 875 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBX2Q13207 712 aaPredicted RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 DNASE1L3Q13609 305 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3GQ6DHY5 549 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3CQ6IPX1 549 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 RASGRP2Q7LDG7 609 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 TBC1D3Q8IZP1 549 aaPredicted RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 NAXEQ8NCW5 288 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 NGDNQ8NEJ9 315 aaKnown RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 ABHD11Q8NFV4 315 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 RP9Q8TA86 221 aaKnown RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 OVCA2Q8WZ82 227 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 ZBTB9Q96C00 473 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 SDCCAG3Q96C92 435 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 FAR2Q96K12 515 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 SEC62Q99442 399 aaKnown RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 PLEKHA2Q9HB19 425 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 SNX15Q9NRS6 342 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 SERTAD4Q9NUC0 356 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 ARPP21Q9UBL0 812 aaPredicted RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 SLC12A4Q9UP95 1085 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 RCE1Q9Y256 329 aa4.64□□□□□ -1.67
VPS29-205ENST00000548539 UBE2J1Q9Y385 318 aaPredicted RBP4.64□□□□□ -1.67
VPS29-205ENST00000548539 J3KRW8 73 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 CPA1P15085 419 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 XBP1P17861 261 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 MMP8P22894 467 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 GALNSP34059 522 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 GRK5P34947 590 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 GRIA3P42263 894 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 LIFRP42702 1097 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 CCR5P51681 352 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 COPB1P53618 953 aaKnown RBP4.63□□□□□ -1.67
VPS29-205ENST00000548539 EEFSECP57772 596 aaKnown RBP4.63□□□□□ -1.67
VPS29-205ENST00000548539 CCDC15Q0P6D6 951 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 LMAN2Q12907 356 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 TRPC3Q13507 836 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 CBFBQ13951 182 aa4.63□□□□□ -1.67
VPS29-205ENST00000548539 SRSF7Q16629 238 aaKnown RBP eCLIP4.63□□□□□ -1.67
VPS29-205ENST00000548539 FAM187BQ17R55 369 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms