RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 PRDM12Q9H4Q4 367 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 PRDM16Q9HAZ2 1276 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 PIH1D1Q9NWS0 290 aaKnown RBP19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 MOCS1Q9NZB8 636 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 DCTN4Q9UJW0 460 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 WDR27A2RRH5 827 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 M0QZ92 97 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 AP1G2O75843 785 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 CHRNA1P02708 482 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 TROVE2P10155 538 aaKnown RBP eCLIP19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 TARSP26639 723 aaKnown RBP19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 CTGFP29279 349 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 CCNFP41002 786 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 RIPK1Q13546 671 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 PAFAH1B3Q15102 231 aaKnown RBP19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 GNASQ5JWF2 1037 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 LGSNQ5TDP6 509 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 CXCL17Q6UXB2 119 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 RFX8Q6ZV50 586 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 HACE1Q8IYU2 909 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 PAAF1Q9BRP4 392 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 WDR6Q9NNW5 1121 aaKnown RBP19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 TXLNGQ9NUQ3 528 aa19.1■□□□□ 0.65
PRPF40B-208ENST00000548436 SF3B1O75533 1304 aaKnown RBP eCLIP19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 SHROOM3Q8TF72 1996 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 MANSC4A6NHS7 340 aaPredicted RBP19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 EEF2KO00418 725 aaKnown RBP19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 TNPO2O14787 897 aaKnown RBP19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 DCLK1O15075 740 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 DUSP11O75319 330 aaKnown RBP19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 T-ENOLP0DO92 83 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 ADRA1BP35368 520 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 LHX1P48742 406 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 SARNPP82979 210 aaKnown RBP19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 WASHC5Q12768 1159 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 SWT1Q5T5J6 900 aaKnown RBP19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 TMEM86AQ8N2M4 240 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 CCNYQ8ND76 341 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 ZNF398Q8TD17 642 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 MAGEC3Q8TD91 643 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 SOCS4Q8WXH5 440 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 STAMBPL1Q96FJ0 436 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 SEPT10Q9P0V9 454 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 HAO1Q9UJM8 370 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 STK38LQ9Y2H1 464 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 PLLPQ9Y342 182 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 ARL5CA6NH57 179 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 A8MUI8 341 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 CAPN9O14815 690 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 OPHN1O60890 802 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 KRT38O76015 456 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 USP17L7P0C7H9 530 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 MLNP12872 115 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 PSMB4P28070 264 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 CDK16Q00536 496 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 PDK1Q15118 436 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 MROH9Q5TGP6 573 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 STEAP4Q687X5 459 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 LRRC8BQ6P9F7 803 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 AGMOQ6ZNB7 445 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 ZNF567Q8N184 647 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 MTG1Q9BT17 334 aaPredicted RBP19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 SLC13A1Q9BZW2 595 aa19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 IQCGQ9H095 443 aaKnown RBP19.09■□□□□ 0.65
PRPF40B-208ENST00000548436 CASTOR2A6NHX0 329 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 FBXO21O94952 628 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 SCNN1GP51170 649 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 TAF1BQ53T94 588 aaPredicted RBP19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 RAB41Q5JT25 222 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 DSTYKQ6XUX3 929 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 DEPDC1BQ8WUY9 529 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 ARNTL2Q8WYA1 636 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 UTP4Q969X6 686 aaKnown RBP19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 MTBPQ96DY7 904 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 TMEM237Q96Q45 408 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 MECRQ9BV79 373 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 SENP6Q9GZR1 1112 aaPredicted RBP19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 KCNK13Q9HB14 408 aa19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 EIF2B3Q9NR50 452 aaKnown RBP19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 TDRD15B5MCY1 1934 aaKnown RBP19.08■□□□□ 0.64
PRPF40B-208ENST00000548436 SDR42E2A6NKP2 422 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 HHLA1C9JL84 531 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 ATP5HO75947 161 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 ALDH1A2O94788 518 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 STK10O94804 968 aaKnown RBP19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 NEFHP12036 1026 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 MGAT1P26572 445 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 SESN2P58004 480 aaPredicted RBP19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 SEMA3BQ13214 749 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 CASC4Q6P4E1 433 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 CYS1Q717R9 158 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 MTDHQ86UE4 582 aaKnown RBP19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 IFNL1Q8IU54 200 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 APBB2Q92870 758 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 SLC9A7Q96T83 725 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 TRIM55Q9BYV6 548 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 RHOBTB2Q9BYZ6 727 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 CNGB3Q9NQW8 809 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 SLC17A6Q9P2U8 582 aa19.07■□□□□ 0.64
PRPF40B-208ENST00000548436 A0A0G2JND7 137 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms