RNA–Protein interactions for RNA: ENST00000548421.2

BRF1-213, Transcript of BRF1, RNA polymerase III transcription initiation factor subunit, humanhuman

TSL 1 (best) BASIC

Gene BRF1, Length 1,452 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1-213ENST00000548421 TSC1Q92574 1164 aa29.78■■■□□ 2.36
BRF1-213ENST00000548421 MSLNLQ96KJ4 702 aa29.78■■■□□ 2.36
BRF1-213ENST00000548421 C1orf74Q96LT6 269 aa29.78■■■□□ 2.36
BRF1-213ENST00000548421 EPAS1Q99814 870 aa29.78■■■□□ 2.36
BRF1-213ENST00000548421 SIK2Q9H0K1 926 aa29.78■■■□□ 2.36
BRF1-213ENST00000548421 CDH22Q9UJ99 828 aa29.78■■■□□ 2.36
BRF1-213ENST00000548421 HS3ST4Q9Y661 456 aa29.78■■■□□ 2.36
BRF1-213ENST00000548421 FGGP02679 453 aa29.77■■■□□ 2.36
BRF1-213ENST00000548421 CORO1AP31146 461 aaKnown RBP29.77■■■□□ 2.36
BRF1-213ENST00000548421 ARL4AP40617 200 aa29.77■■■□□ 2.36
BRF1-213ENST00000548421 ZXDBP98169 803 aa29.77■■■□□ 2.36
BRF1-213ENST00000548421 SEMA3BQ13214 749 aa29.77■■■□□ 2.36
BRF1-213ENST00000548421 AZIN2Q96A70 460 aa29.77■■■□□ 2.36
BRF1-213ENST00000548421 NAP1L3Q99457 506 aaPredicted RBP29.77■■■□□ 2.36
BRF1-213ENST00000548421 CDX2Q99626 313 aaPredicted RBP29.77■■■□□ 2.36
BRF1-213ENST00000548421 DCLK3Q9C098 648 aa29.77■■■□□ 2.36
BRF1-213ENST00000548421 EFR3BQ9Y2G0 817 aa29.77■■■□□ 2.36
BRF1-213ENST00000548421 H3BRJ5 948 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 CREB3O43889 395 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 IL4RP24394 825 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 PAFAH1B1P43034 410 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 SLC11A2P49281 568 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 NRG1Q02297 640 aaPredicted RBP29.76■■■□□ 2.35
BRF1-213ENST00000548421 MMRN1Q13201 1228 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 LLGL1Q15334 1064 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 HABP4Q5JVS0 413 aaKnown RBP29.76■■■□□ 2.35
BRF1-213ENST00000548421 PIK3R6Q5UE93 754 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 DDX42Q86XP3 938 aaKnown RBP eCLIP29.76■■■□□ 2.35
BRF1-213ENST00000548421 SLC13A5Q86YT5 568 aaPredicted RBP29.76■■■□□ 2.35
BRF1-213ENST00000548421 ADAMTS19Q8TE59 1207 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 FAF2Q96CS3 445 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 RIPOR3Q96MK2 946 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 L2HGDHQ9H9P8 463 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 CWC15Q9P013 229 aaKnown RBP29.76■■■□□ 2.35
BRF1-213ENST00000548421 SNX10Q9Y5X0 201 aa29.76■■■□□ 2.35
BRF1-213ENST00000548421 BRWD1Q9NSI6 2320 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 DENND4AQ7Z401 1863 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 FAM72CH0Y354 149 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 GOT1P17174 413 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 MLLT6P55198 1093 aaPredicted RBP29.75■■■□□ 2.35
BRF1-213ENST00000548421 CKAP4Q07065 602 aaKnown RBP29.75■■■□□ 2.35
BRF1-213ENST00000548421 LONRF2Q1L5Z9 754 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 ANKRD20A8PQ5CZ79 823 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 MS4A13Q5J8X5 152 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 FAM72AQ5TYM5 149 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 FAM72DQ6L9T8 149 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 GET4Q7L5D6 327 aaPredicted RBP29.75■■■□□ 2.35
BRF1-213ENST00000548421 FAM72BQ86X60 149 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 DENND1CQ8IV53 801 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 NPAS3Q8IXF0 933 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 ZSWIM3Q96MP5 696 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 CSPG4P5Q96PW8 444 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 MAK16Q9BXY0 300 aaKnown RBP29.75■■■□□ 2.35
BRF1-213ENST00000548421 SMG9Q9H0W8 520 aaKnown RBP29.75■■■□□ 2.35
BRF1-213ENST00000548421 TDP1Q9NUW8 608 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 SMARCAL1Q9NZC9 954 aa29.75■■■□□ 2.35
BRF1-213ENST00000548421 LSM7Q9UK45 103 aaKnown RBP29.75■■■□□ 2.35
BRF1-213ENST00000548421 EEF2KO00418 725 aaKnown RBP29.74■■■□□ 2.35
BRF1-213ENST00000548421 ACSL4O60488 711 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 LATS1O95835 1130 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 KLKB1P03952 638 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 KRT10P13645 584 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 WEE1P30291 646 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 GGCXP38435 758 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 CBX2Q14781 532 aaPredicted RBP29.74■■■□□ 2.35
BRF1-213ENST00000548421 KAZNQ674X7 775 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 USP13Q92995 863 aaPredicted RBP29.74■■■□□ 2.35
BRF1-213ENST00000548421 WBP2Q969T9 261 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 RNF157Q96PX1 679 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 HEMGNQ9BXL5 484 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 CFAP97Q9P2B7 532 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 SH3BP1Q9Y3L3 701 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 LEFTY2O00292 366 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 TJP3O95049 919 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 HTR7P34969 479 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 MTHFRP42898 656 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 HCAR3P49019 387 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 TPI1P60174 286 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 POTEHQ6S545 545 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 RFX6Q8HWS3 928 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 FGF13Q92913 245 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 HERPUD2Q9BSE4 406 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 AGO1Q9UL18 857 aaKnown RBP29.74■■■□□ 2.35
BRF1-213ENST00000548421 CCL26Q9Y258 94 aa29.74■■■□□ 2.35
BRF1-213ENST00000548421 PDE2AO00408 941 aaPredicted RBP29.73■■■□□ 2.35
BRF1-213ENST00000548421 GREM1O60565 184 aa29.73■■■□□ 2.35
BRF1-213ENST00000548421 LRIG2O94898 1065 aa29.73■■■□□ 2.35
BRF1-213ENST00000548421 MANEALQ5VSG8 457 aa29.73■■■□□ 2.35
BRF1-213ENST00000548421 RAP1GAP2Q684P5 730 aa29.73■■■□□ 2.35
BRF1-213ENST00000548421 NADSYN1Q6IA69 706 aa29.73■■■□□ 2.35
BRF1-213ENST00000548421 RFX8Q6ZV50 586 aa29.73■■■□□ 2.35
BRF1-213ENST00000548421 DEFB123Q8N688 67 aa29.73■■■□□ 2.35
BRF1-213ENST00000548421 SMRP1Q8NCR6 262 aa29.73■■■□□ 2.35
BRF1-213ENST00000548421 ZSCAN18Q8TBC5 510 aaPredicted RBP29.73■■■□□ 2.35
BRF1-213ENST00000548421 TRAF3IP1Q8TDR0 691 aaPredicted RBP29.73■■■□□ 2.35
BRF1-213ENST00000548421 SH3RF2Q8TEC5 729 aa29.73■■■□□ 2.35
BRF1-213ENST00000548421 PRMT1Q99873 361 aaKnown RBP29.73■■■□□ 2.35
BRF1-213ENST00000548421 GDE1Q9NZC3 331 aa29.73■■■□□ 2.35
BRF1-213ENST00000548421 XIRP2A4UGR9 3374 aa29.72■■■□□ 2.35
BRF1-213ENST00000548421 PRAMEF12O95522 483 aa29.72■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms