RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 MMGT1Q8N4V1 131 aa8.84□□□□□ -0.99
CLIP1-218ENST00000545889 VPS37AQ8NEZ2 397 aa8.84□□□□□ -0.99
CLIP1-218ENST00000545889 MTBPQ96DY7 904 aa8.84□□□□□ -0.99
CLIP1-218ENST00000545889 PNMA8BQ9ULN7 279 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-218ENST00000545889 USP18Q9UMW8 372 aa8.84□□□□□ -0.99
CLIP1-218ENST00000545889 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.84□□□□□ -0.99
CLIP1-218ENST00000545889 CST8O60676 142 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 ADRB2P07550 413 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 STMN1P16949 149 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 SERPINB3P29508 390 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 TNFSF9P41273 254 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 MAGEA10P43363 369 aaPredicted RBP8.84□□□□□ -1
CLIP1-218ENST00000545889 EIF3BP55884 814 aaKnown RBP8.84□□□□□ -1
CLIP1-218ENST00000545889 GTF2BQ00403 316 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 SMTNL2Q2TAL5 461 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 IZUMO3Q5VZ72 239 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 CAMKK1Q8N5S9 505 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 MSL3Q8N5Y2 521 aaKnown RBP8.84□□□□□ -1
CLIP1-218ENST00000545889 HELQQ8TDG4 1101 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 HDAC7Q8WUI4 952 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 CLPBQ9H078 707 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 MRPL46Q9H2W6 279 aaKnown RBP8.84□□□□□ -1
CLIP1-218ENST00000545889 KCTD10Q9H3F6 313 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 FAM96AQ9H5X1 160 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 ASB7Q9H672 318 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 CYP3A43Q9HB55 503 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 PPARGC1AQ9UBK2 798 aaKnown RBP8.84□□□□□ -1
CLIP1-218ENST00000545889 DTNAQ9Y4J8 743 aa8.84□□□□□ -1
CLIP1-218ENST00000545889 RBAK-RBAKDNI3L0D1 243 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 PDE2AO00408 941 aaPredicted RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 FOXN3O00409 490 aaPredicted RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 HNRNPRO43390 633 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 DUSP11O75319 330 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 RECQL4O94761 1208 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 APOA4P06727 396 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 CSH1P0DML2 217 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 CSH2P0DML3 217 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 MAPTP10636 758 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 LAG3P18627 525 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 EEF1B2P24534 225 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 CCDC85BQ15834 202 aaPredicted RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 HIF1AQ16665 826 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 ANKRD20A4Q4UJ75 823 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 CBWD6Q4V339 395 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 CBWD3Q5JTY5 395 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 CBWD5Q5RIA9 395 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 C6orf118Q5T5N4 469 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 C16orf87Q6PH81 154 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 IRF2BP1Q8IU81 584 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 MDM1Q8TC05 714 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 OSCP1Q8WVF1 389 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 CRYGNQ8WXF5 182 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 DNAJC9Q8WXX5 260 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 EDEM1Q92611 657 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 ELMO2Q96JJ3 720 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 ZFP42Q96MM3 310 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 PRPF18Q99633 342 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 ADGRE3Q9BY15 652 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 RNF186Q9NXI6 227 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 SRRDQ9UH36 339 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 ARHGAP26Q9UNA1 814 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 RAMP2O60895 175 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 CHKAP35790 457 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 MYL6P60660 151 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 PPP2R2AP63151 447 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 TGM3Q08188 693 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 PPP3CAQ08209 521 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 BLMHQ13867 455 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 SPARCL1Q14515 664 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 C2CD6Q53TS8 623 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 FSCBQ5H9T9 825 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 PPP1R16AQ96I34 528 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 OSBPL7Q9BZF2 842 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 DHX33Q9H6R0 707 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 C20orf96Q9NUD7 363 aaPredicted RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 INTS13Q9NVM9 706 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 WWOXQ9NZC7 414 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 TRMT6Q9UJA5 497 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 FAM32AQ9Y421 112 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 ECM29Q5VYK3 1845 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 NT5C1B-RDH14C9J2C7 533 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 SEPT4O43236 478 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 SELPP16109 830 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 CCND3P30281 292 aaPredicted RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 ATP5C1P36542 298 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 MLH1P40692 756 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 GEMP55040 296 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 NCALDP61601 193 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 PSMD5Q16401 504 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 UGT3A1Q6NUS8 523 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 CCDC137Q6PK04 289 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 USP38Q8NB14 1042 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 TSEN2Q8NCE0 465 aaKnown RBP8.83□□□□□ -1
CLIP1-218ENST00000545889 ZSWIM2Q8NEG5 633 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 SENP8Q96LD8 212 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 RIPOR3Q96MK2 946 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 FGFR1OP2Q9NVK5 253 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 NMRK1Q9NWW6 199 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 TMEM161AQ9NX61 479 aa8.83□□□□□ -1
CLIP1-218ENST00000545889 STX18Q9P2W9 335 aaKnown RBP8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms