RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 RASSF1Q9NS23 344 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 CHST7Q9NS84 486 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 SAMSN1Q9NSI8 373 aaKnown RBP5.41□□□□□ -1.54
CLIP1-217ENST00000543205 CDC23Q9UJX2 597 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 PCDHGC5Q9Y5F6 944 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 PCDHGA9Q9Y5G4 932 aaKnown RBP5.41□□□□□ -1.54
CLIP1-217ENST00000543205 PCDHGA8Q9Y5G5 932 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 PCDHGA7Q9Y5G6 932 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 PCDHGA6Q9Y5G7 932 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 PCDHGA3Q9Y5H0 932 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 PCDHGA2Q9Y5H1 932 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 TIMM13Q9Y5L4 95 aaPredicted RBP5.41□□□□□ -1.54
CLIP1-217ENST00000543205 SNX9Q9Y5X1 595 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 NLRC5Q86WI3 1866 aa5.41□□□□□ -1.54
CLIP1-217ENST00000543205 HIDE1A8MVS5 230 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 F8W735 103 aaPredicted RBP5.4□□□□□ -1.54
CLIP1-217ENST00000543205 PES1O00541 588 aaKnown RBP5.4□□□□□ -1.54
CLIP1-217ENST00000543205 PER2O15055 1255 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 VNN1O95497 513 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 DLGAP3O95886 979 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 TYMPP19971 482 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 EEF1GP26641 437 aaKnown RBP5.4□□□□□ -1.54
CLIP1-217ENST00000543205 RAD52P43351 418 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 NRIP1P48552 1158 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 FMO5P49326 533 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 PPP2R2AP63151 447 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 MYL7Q01449 175 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 ROR1Q01973 937 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 YWHAHQ04917 246 aaPredicted RBP5.4□□□□□ -1.54
CLIP1-217ENST00000543205 MAN2A1Q16706 1144 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 CTXN3Q4LDR2 81 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 CBWD6Q4V339 395 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 TRIM61Q5EBN2 209 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 TCP11X2Q5H9J9 407 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 TCEAL5Q5H9L2 206 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 ZNF667Q5HYK9 610 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 CBWD3Q5JTY5 395 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 CBWD5Q5RIA9 395 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 WSCD1Q658N2 575 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 SCARA3Q6AZY7 606 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 OVOS1Q6IE37 1185 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 LRSAM1Q6UWE0 723 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 ADGRD2Q7Z7M1 963 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 IRF2BP1Q8IU81 584 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 THEM5Q8N1Q8 247 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 TOP6BLQ8N6T0 577 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 LNX1Q8TBB1 728 aaPredicted RBP5.4□□□□□ -1.54
CLIP1-217ENST00000543205 TAS1R2Q8TE23 839 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 KLHL5Q96PQ7 755 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 TBCBQ99426 244 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 CDCA3Q99618 268 aaPredicted RBP5.4□□□□□ -1.54
CLIP1-217ENST00000543205 BARD1Q99728 777 aaKnown RBP5.4□□□□□ -1.54
CLIP1-217ENST00000543205 TM9SF2Q99805 663 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 TUBGCP2Q9BSJ2 902 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 CXorf56Q9H5V9 222 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 AKTIPQ9H8T0 292 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 RAD18Q9NS91 495 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 RAB20Q9NX57 234 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 GDAP2Q9NXN4 497 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 APOBEC2Q9Y235 224 aaKnown RBP5.4□□□□□ -1.54
CLIP1-217ENST00000543205 IRAK3Q9Y616 596 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 KIAA1671Q9BY89 1806 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 BDP1A6H8Y1 2624 aa5.4□□□□□ -1.54
CLIP1-217ENST00000543205 TRIP11Q15643 1979 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 TRAV20A0A0B4J274 112 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 FSD2A1L4K1 749 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 KRBA1A5PL33 1030 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 SYNDIG1LA6NDD5 238 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 GOLGA6L19H0YKK7 550 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 K7ESF4 209 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 P4HA2O15460 535 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 TEX28O15482 410 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 NCK2O43639 380 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 AP1G1O43747 822 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 TMCC2O75069 709 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 CLASP2O75122 1294 aaKnown RBP5.4□□□□□ -1.55
CLIP1-217ENST00000543205 ALX3O95076 343 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 OAZ2O95190 189 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 CNPP09543 421 aaKnown RBP5.4□□□□□ -1.55
CLIP1-217ENST00000543205 SRGAP2BP0DMP2 458 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 RPL17P18621 184 aaKnown RBP5.4□□□□□ -1.55
CLIP1-217ENST00000543205 GRIK1P39086 918 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 GRK6P43250 576 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 LHX1P48742 406 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 NDUFV1P49821 464 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 ARPP19P56211 112 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 SLC9A5Q14940 896 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 DUSP6Q16828 381 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 SOWAHAQ2M3V2 549 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 VWA3BQ502W6 1294 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 EXOSC6Q5RKV6 272 aaKnown RBP5.4□□□□□ -1.55
CLIP1-217ENST00000543205 CDKAL1Q5VV42 579 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 EP400NLQ6ZTU2 488 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 PPFIBP1Q86W92 1011 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 KRTAP19-1Q8IUB9 90 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 DHX40Q8IX18 779 aaKnown RBP5.4□□□□□ -1.55
CLIP1-217ENST00000543205 ADGRF2Q8IZF7 708 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 TMEM86AQ8N2M4 240 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 NXPE1Q8N323 547 aa5.4□□□□□ -1.55
CLIP1-217ENST00000543205 PDCL2Q8N4E4 241 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms