RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PYGBP11216 843 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 MAGEA3P43357 314 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 IFRD2Q12894 506 aaPredicted RBP16.84■□□□□ 0.29
COL4A1-204ENST00000543140 SEMA5AQ13591 1074 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 CD300LGQ6UXG3 332 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 BZW1Q7L1Q6 419 aaKnown RBP16.84■□□□□ 0.29
COL4A1-204ENST00000543140 LRRTM3Q86VH5 581 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 LRRC6Q86X45 466 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 KLHDC9Q8NEP7 349 aa16.84■□□□□ 0.29
COL4A1-204ENST00000543140 SHROOM3Q8TF72 1996 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 APOEP02649 317 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 ERCC2P18074 760 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 TPSB2P20231 275 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 DSC3Q14574 896 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 PRKD1Q15139 912 aaPredicted RBP16.83■□□□□ 0.28
COL4A1-204ENST00000543140 TPSAB1Q15661 275 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 CCSAPQ6IQ19 270 aaPredicted RBP16.83■□□□□ 0.28
COL4A1-204ENST00000543140 CASC4Q6P4E1 433 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 SLC26A11Q86WA9 606 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 METTL23Q86XA0 190 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 OR10T2Q8NGX3 314 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 EBNA1BP2Q99848 306 aaKnown RBP16.83■□□□□ 0.28
COL4A1-204ENST00000543140 SSU72Q9NP77 194 aaKnown RBP16.83■□□□□ 0.28
COL4A1-204ENST00000543140 PNPLA8Q9NP80 782 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 PRKAG3Q9UGI9 489 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 TRIM49D1C9J1S8 452 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 LPXNO60711 386 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 RAB27AP51159 221 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 TPI1P60174 286 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 ITGA7Q13683 1181 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 PDK1Q15118 436 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 BHLHA9Q7RTU4 235 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 UNC5BQ8IZJ1 945 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 ZNF75CPQ92670 426 aaPredicted RBP16.83■□□□□ 0.28
COL4A1-204ENST00000543140 HAUS2Q9NVX0 235 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 FBXW11Q9UKB1 542 aa16.83■□□□□ 0.28
COL4A1-204ENST00000543140 DCLK1O15075 740 aa16.82■□□□□ 0.28
COL4A1-204ENST00000543140 PSMB4P28070 264 aa16.82■□□□□ 0.28
COL4A1-204ENST00000543140 SESN2P58004 480 aaPredicted RBP16.82■□□□□ 0.28
COL4A1-204ENST00000543140 MGAT5Q09328 741 aa16.82■□□□□ 0.28
COL4A1-204ENST00000543140 WASHC5Q12768 1159 aa16.82■□□□□ 0.28
COL4A1-204ENST00000543140 BMPR2Q13873 1038 aa16.82■□□□□ 0.28
COL4A1-204ENST00000543140 SMAD1Q15797 465 aaKnown RBP16.82■□□□□ 0.28
COL4A1-204ENST00000543140 SCAMP5Q8TAC9 235 aa16.82■□□□□ 0.28
COL4A1-204ENST00000543140 ACBD6Q9BR61 282 aa16.82■□□□□ 0.28
COL4A1-204ENST00000543140 COLEC11Q9BWP8 271 aa16.82■□□□□ 0.28
COL4A1-204ENST00000543140 XAB2Q9HCS7 855 aaKnown RBP16.82■□□□□ 0.28
COL4A1-204ENST00000543140 KLHL14Q9P2G3 628 aa16.82■□□□□ 0.28
COL4A1-204ENST00000543140 WDR27A2RRH5 827 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 CAPN15O75808 1086 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 STK10O94804 968 aaKnown RBP16.81■□□□□ 0.28
COL4A1-204ENST00000543140 CSH1P0DML2 217 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 CSH2P0DML3 217 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 INTS6LQ5JSJ4 861 aaKnown RBP16.81■□□□□ 0.28
COL4A1-204ENST00000543140 ZNF567Q8N184 647 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 FITM2Q8N6M3 262 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 DEPDC1BQ8WUY9 529 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 LRRC39Q96DD0 335 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 WDCPQ9H6R7 721 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 TRDMT1O14717 391 aaKnown RBP16.81■□□□□ 0.28
COL4A1-204ENST00000543140 PRKCHP24723 683 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 NKX3-2P78367 333 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 GRIK3Q13003 919 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 TUSC3Q13454 348 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 OLIG2Q13516 323 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 PAFAH1B3Q15102 231 aaKnown RBP16.81■□□□□ 0.28
COL4A1-204ENST00000543140 TTC39BQ5VTQ0 682 aaPredicted RBP16.81■□□□□ 0.28
COL4A1-204ENST00000543140 OVOS1Q6IE37 1185 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 FAM171BQ6P995 826 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 ECHDC2Q86YB7 292 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 CNPY4Q8N129 248 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 NPWQ8N729 165 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 RSPH1Q8WYR4 309 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 ALKBH8Q96BT7 664 aaKnown RBP16.81■□□□□ 0.28
COL4A1-204ENST00000543140 FAM111AQ96PZ2 611 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 SLC9A7Q96T83 725 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 TKTL2Q9H0I9 626 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 CSNK1G1Q9HCP0 422 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 SLC12A4Q9UP95 1085 aa16.81■□□□□ 0.28
COL4A1-204ENST00000543140 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.8■□□□□ 0.28
COL4A1-204ENST00000543140 C9IYK1 514 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 PPP1R12AO14974 1030 aaPredicted RBP16.8■□□□□ 0.28
COL4A1-204ENST00000543140 OPHN1O60890 802 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 FDFT1P37268 417 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 GLUD2P49448 558 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 SARNPP82979 210 aaKnown RBP16.8■□□□□ 0.28
COL4A1-204ENST00000543140 CBLBQ13191 982 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 PID1Q7Z2X4 250 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 GSDMBQ8TAX9 411 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 RNF34Q969K3 372 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 GRAMD1AQ96CP6 724 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 PGBD4Q96DM1 585 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 SLC40A1Q9NP59 571 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 OR12D3Q9UGF7 316 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 TM9SF1O15321 606 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 EDF1O60869 148 aaKnown RBP16.8■□□□□ 0.28
COL4A1-204ENST00000543140 SEMA3BQ13214 749 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 ARL13BQ3SXY8 428 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 RGS9BPQ6ZS82 235 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 SH2D5Q6ZV89 423 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 288.3 ms