RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 UBE2J1Q9Y385 318 aaPredicted RBP3.67□□□□□ -1.82
USP28-210ENST00000542033 LRRFIP2Q9Y608 721 aaKnown RBP3.67□□□□□ -1.82
USP28-210ENST00000542033 WIPF3A6NGB9 483 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 SYT5O00445 386 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 TRIM38O00635 465 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 DHHO43323 396 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 CER1O95813 267 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 TUBB4AP04350 444 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 KLRK1P26718 216 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 PDIA3P30101 505 aaKnown RBP3.66□□□□□ -1.82
USP28-210ENST00000542033 CASP2P42575 452 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 MAPK9P45984 424 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 VPS41P49754 854 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 SLC14A1Q13336 389 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 ZNF569Q5MCW4 686 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 ACSM6Q6P461 480 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 LVRNQ6Q4G3 990 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 KLHL17Q6TDP4 642 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 RFX8Q6ZV50 586 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 TRABD2AQ86V40 505 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 CCDC117Q8IWD4 279 aaPredicted RBP3.66□□□□□ -1.82
USP28-210ENST00000542033 CACNA2D3Q8IZS8 1091 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 NME8Q8N427 588 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 C8orf58Q8NAV2 365 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 PPHLN1Q8NEY8 458 aaKnown RBP3.66□□□□□ -1.82
USP28-210ENST00000542033 SLC22A17Q8WUG5 538 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 AKAP1Q92667 903 aaKnown RBP eCLIP3.66□□□□□ -1.82
USP28-210ENST00000542033 DPF1Q92782 380 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 PAGR1Q9BTK6 254 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 EFHD1Q9BUP0 239 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 KATNAL1Q9BW62 490 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 TMEM120AQ9BXJ8 343 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 NUAK2Q9H093 628 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 TP63Q9H3D4 680 aaPredicted RBP3.66□□□□□ -1.82
USP28-210ENST00000542033 NRIP3Q9NQ35 241 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 HERC5Q9UII4 1024 aaKnown RBP3.66□□□□□ -1.82
USP28-210ENST00000542033 HEMK1Q9Y5R4 338 aaPredicted RBP3.66□□□□□ -1.82
USP28-210ENST00000542033 SPATA31A1Q5TZJ5 1347 aa3.66□□□□□ -1.82
USP28-210ENST00000542033 KAT6AQ92794 2004 aa3.65□□□□□ -1.82
USP28-210ENST00000542033 GXYLT2A0PJZ3 443 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 ACKR2O00590 384 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 PPP6CO00743 305 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 DSCR3O14972 297 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 RPP40O75818 363 aaKnown RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 LATS1O95835 1130 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 MBPP02686 304 aaPredicted RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 HSP90AA1P07900 732 aaKnown RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 CELA2AP08217 269 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 DHRS4L1P0CG22 281 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 ATF7P17544 494 aaPredicted RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 BDNFP23560 247 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 TACR3P29371 465 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 MPGP29372 298 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 SLC8A1P32418 973 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 THBS4P35443 961 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 SERPINF1P36955 418 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 ABCG1P45844 678 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 GALNT1Q10472 559 aaPredicted RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 FOXO1Q12778 655 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 PRKG1Q13976 671 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 KPNB1Q14974 876 aaKnown RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 SLC4A8Q2Y0W8 1093 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 CEP78Q5JTW2 689 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 ANKRD40Q6AI12 368 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 CYP26C1Q6V0L0 522 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 ZNF813Q6ZN06 617 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 ZNF66Q6ZN08 573 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 GPATCH11Q8N954 259 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 IL17REQ8NFR9 667 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 OSR1Q8TAX0 266 aaPredicted RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 HMGB4Q8WW32 186 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 GLMPQ8WWB7 406 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 DDB2Q92466 427 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 RSC1A1Q92681 617 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 TBC1D20Q96BZ9 403 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 EID2BQ96D98 161 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 KAZALD1Q96I82 304 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 REXO5Q96IC2 774 aaKnown RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 PPM1MQ96MI6 270 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 FAM118BQ9BPY3 351 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 PAAF1Q9BRP4 392 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 RTKNQ9BST9 563 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 TRIM2Q9C040 744 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 BRD8Q9H0E9 1235 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 CDCP1Q9H5V8 836 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 CCDC134Q9H6E4 229 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 MAP3K20Q9NYL2 800 aaKnown RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 GJD2Q9UKL4 321 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 SCAF8Q9UPN6 1271 aaKnown RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 LAS1LQ9Y4W2 734 aaKnown RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 PCDHB7Q9Y5E2 793 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 SCINQ9Y6U3 715 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 ARHGEF17Q96PE2 2063 aaPredicted RBP3.65□□□□□ -1.83
USP28-210ENST00000542033 WDR17Q8IZU2 1322 aa3.65□□□□□ -1.83
USP28-210ENST00000542033 PCSK5Q92824 1860 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 FER1L4A9Z1Z3 1794 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 A0A1B0GVC2 190 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 CGB1A6NKQ9 187 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 EFCAB8A8MWE9 144 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 KIF28PB7ZC32 967 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms