RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 TYMPP19971 482 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 EPHB2P29323 1055 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 ATP5DP30049 168 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 CDK7P50613 346 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 XRCC4Q13426 336 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 DEFB128Q7Z7B8 93 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 CPLX4Q7Z7G2 160 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 TMEM173Q86WV6 379 aaPredicted RBP14.98□□□□□ -0.01
CLIP1-216ENST00000541410 CELF6Q96J87 481 aaKnown RBP14.98□□□□□ -0.01
CLIP1-216ENST00000541410 PAFAH2Q99487 392 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 TMEM161AQ9NX61 479 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 MAD1L1Q9Y6D9 718 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 TCRBV9S1A1TA0A576 114 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 INPPL1O15357 1258 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 GCATO75600 419 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 FAM155BO75949 473 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 LRIG2O94898 1065 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 UPP2O95045 317 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 MOCS2O96007 188 aaPredicted RBP14.98□□□□□ -0.01
CLIP1-216ENST00000541410 GEMIN4P57678 1058 aaKnown RBP14.98□□□□□ -0.01
CLIP1-216ENST00000541410 SPARCL1Q14515 664 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 KBTBD12Q3ZCT8 623 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 BTBD8Q5XKL5 378 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 RWDD4Q6NW29 188 aaKnown RBP14.98□□□□□ -0.01
CLIP1-216ENST00000541410 ZNF534Q76KX8 674 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 TADA2BQ86TJ2 420 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 TRABD2AQ86V40 505 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 PDCD7Q8N8D1 485 aaKnown RBP14.98□□□□□ -0.01
CLIP1-216ENST00000541410 COLGALT1Q8NBJ5 622 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 CASP10Q92851 521 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 OSER1Q9NX31 292 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 SLC27A5Q9Y2P5 690 aa14.98□□□□□ -0.01
CLIP1-216ENST00000541410 A0A1W2PQH9 124 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 TNFRSF10BO14763 440 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 VIMP08670 466 aaKnown RBP14.97□□□□□ -0.01
CLIP1-216ENST00000541410 PHBP35232 272 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 CXCR3P49682 368 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 USP46P62068 366 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 SEMA3BQ13214 749 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 MAPRE1Q15691 268 aaKnown RBP14.97□□□□□ -0.01
CLIP1-216ENST00000541410 ARL13BQ3SXY8 428 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 CTXN3Q4LDR2 81 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 PLEKHG4Q58EX7 1191 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 C4orf50Q6ZRC1 276 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 SCD5Q86SK9 330 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 PSTKQ8IV42 348 aaKnown RBP14.97□□□□□ -0.01
CLIP1-216ENST00000541410 LRRC34Q8IZ02 419 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 CHMP6Q96FZ7 201 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 AGAP3Q96P47 875 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 RNF208Q9H0X6 261 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 C12orf65Q9H3J6 166 aaKnown RBP14.97□□□□□ -0.01
CLIP1-216ENST00000541410 TRABDQ9H4I3 376 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 RCOR3Q9P2K3 495 aaPredicted RBP14.97□□□□□ -0.01
CLIP1-216ENST00000541410 LRFN2Q9ULH4 789 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.97□□□□□ -0.01
CLIP1-216ENST00000541410 PATJQ8NI35 1801 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 C5orf60A6NFR6 353 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 PSMB4P28070 264 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 NTAN1Q96AB6 310 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 CASD1Q96PB1 797 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 ZNF317Q96PQ6 595 aaPredicted RBP14.97□□□□□ -0.01
CLIP1-216ENST00000541410 SLC9A7Q96T83 725 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 FTHL17Q9BXU8 183 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 ACSS3Q9H6R3 686 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 ADAM28Q9UKQ2 775 aa14.97□□□□□ -0.01
CLIP1-216ENST00000541410 A0A0A0MRY4 1105 aa14.96□□□□□ -0.01
CLIP1-216ENST00000541410 OAZ2O95190 189 aa14.96□□□□□ -0.01
CLIP1-216ENST00000541410 SLC11A1P49279 550 aa14.96□□□□□ -0.01
CLIP1-216ENST00000541410 WASHC5Q12768 1159 aa14.96□□□□□ -0.01
CLIP1-216ENST00000541410 BFSP2Q13515 415 aa14.96□□□□□ -0.01
CLIP1-216ENST00000541410 RSPO2Q6UXX9 243 aaPredicted RBP14.96□□□□□ -0.01
CLIP1-216ENST00000541410 ZNF567Q8N184 647 aa14.96□□□□□ -0.01
CLIP1-216ENST00000541410 PGAP3Q96FM1 320 aaPredicted RBP14.96□□□□□ -0.01
CLIP1-216ENST00000541410 SPATA13Q96N96 652 aa14.96□□□□□ -0.01
CLIP1-216ENST00000541410 ZCWPW1Q9H0M4 648 aa14.96□□□□□ -0.01
CLIP1-216ENST00000541410 PLAC1Q9HBJ0 212 aa14.96□□□□□ -0.01
CLIP1-216ENST00000541410 KANSL3Q9P2N6 904 aa14.96□□□□□ -0.01
CLIP1-216ENST00000541410 PSMC3IPQ9P2W1 217 aaPredicted RBP14.96□□□□□ -0.01
CLIP1-216ENST00000541410 ZC3H7BQ9UGR2 993 aaKnown RBP14.96□□□□□ -0.01
CLIP1-216ENST00000541410 MAGED2Q9UNF1 606 aaPredicted RBP14.96□□□□□ -0.01
CLIP1-216ENST00000541410 TBKBP1A7MCY6 615 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 DNM1LO00429 736 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 DRD4P21917 467 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 MSH2P43246 934 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 NUMBP49757 651 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 SCAPQ12770 1279 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 PAFAH1B3Q15102 231 aaKnown RBP14.96□□□□□ -0.02
CLIP1-216ENST00000541410 PDK1Q15118 436 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 PRKD1Q15139 912 aaPredicted RBP14.96□□□□□ -0.02
CLIP1-216ENST00000541410 TAS1R1Q7RTX1 841 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 PID1Q7Z2X4 250 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 CTAGE3PQ8IX95 158 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 UNC5BQ8IZJ1 945 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 IRGQQ8WZA9 623 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 CENPTQ96BT3 561 aa14.96□□□□□ -0.02
CLIP1-216ENST00000541410 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.95□□□□□ -0.02
CLIP1-216ENST00000541410 CXorf49A8MYA2 514 aaPredicted RBP14.95□□□□□ -0.02
CLIP1-216ENST00000541410 UGT1A9O60656 530 aa14.95□□□□□ -0.02
CLIP1-216ENST00000541410 USP12O75317 370 aa14.95□□□□□ -0.02
CLIP1-216ENST00000541410 F9P00740 461 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms