RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZNF341Q9BYN7 854 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 GGA3Q9NZ52 723 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 KLF15Q9UIH9 416 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 CDH22Q9UJ99 828 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 RIMS3Q9UJD0 308 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 SYNGAP1Q96PV0 1343 aa9.73□□□□□ -0.85
CLIP1-214ENST00000540539 WTIPA6NIX2 430 aaPredicted RBP9.72□□□□□ -0.85
CLIP1-214ENST00000540539 AURKAO14965 403 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 ASNA1O43681 348 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 CLPXO76031 633 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 FGFR2P21802 821 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 RPL10P27635 214 aaKnown RBP9.72□□□□□ -0.85
CLIP1-214ENST00000540539 MCM7P33993 719 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 KRT20P35900 424 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 TXNL4AP83876 142 aaKnown RBP9.72□□□□□ -0.85
CLIP1-214ENST00000540539 STX3Q13277 289 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 FAM47CQ5HY64 1035 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 LDLRAP1Q5SW96 308 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 FAM182AQ5T1J6 154 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 HPS6Q86YV9 775 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 HERC6Q8IVU3 1022 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 SP8Q8IXZ3 490 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 LRGUKQ96M69 825 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 CITED4Q96RK1 184 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 ZNF347Q96SE7 839 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 LPIN3Q9BQK8 851 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 CCDC106Q9BWC9 280 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 ADAM33Q9BZ11 813 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 SENP1Q9P0U3 644 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 LRRC37AA6NMS7 1700 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 TYW5A2RUC4 315 aaKnown RBP9.72□□□□□ -0.85
CLIP1-214ENST00000540539 E5RJQ4 531 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 SHOXO15266 292 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 MTSS1O43312 755 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 PRKAB2O43741 272 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 DYRK3O43781 588 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 EPN2O95208 641 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 ADORA1P30542 326 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 OR3A3P47888 321 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 PTPN5P54829 565 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 POLR2GP62487 172 aaKnown RBP eCLIP9.72□□□□□ -0.85
CLIP1-214ENST00000540539 PRAMEP78395 509 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 GPLD1P80108 840 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 RHAGQ02094 409 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 MAPRE1Q15691 268 aaKnown RBP9.72□□□□□ -0.85
CLIP1-214ENST00000540539 PLEKHG7Q6ZR37 379 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 CARM1Q86X55 608 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 EFCAB3Q8N7B9 438 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 TTLL6Q8N841 843 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 LEMD2Q8NC56 503 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 OR5H6Q8NGV6 325 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 SLC39A13Q96H72 371 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 HEXIM2Q96MH2 286 aaKnown RBP9.72□□□□□ -0.85
CLIP1-214ENST00000540539 NLRP4Q96MN2 994 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 C1QTNF7Q9BXJ2 289 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 GANQ9H2C0 597 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 KCNN2Q9H2S1 579 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 NANOGQ9H9S0 305 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 TRIM39Q9HCM9 518 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 NID2Q14112 1375 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 ATP8B3O60423 1300 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 IGSF9BQ9UPX0 1349 aa9.72□□□□□ -0.85
CLIP1-214ENST00000540539 PNMA6FA0A0J9YX94 578 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 OR5K3A6NET4 321 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 RNASEH2AO75792 299 aaKnown RBP9.71□□□□□ -0.85
CLIP1-214ENST00000540539 ALDH1A2O94788 518 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 NADKO95544 446 aaPredicted RBP9.71□□□□□ -0.85
CLIP1-214ENST00000540539 SLC5A1P13866 664 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 ATF4P18848 351 aaPredicted RBP9.71□□□□□ -0.85
CLIP1-214ENST00000540539 MARCKSL1P49006 195 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 ITGA8P53708 1063 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 ASIC1P78348 528 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 PPATQ06203 517 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 PRKD1Q15139 912 aaPredicted RBP9.71□□□□□ -0.85
CLIP1-214ENST00000540539 CYP1B1Q16678 543 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 DUSP7Q16829 419 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 CYP4F22Q6NT55 531 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 CENPUQ71F23 418 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 CADM2Q8N3J6 435 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 FANCBQ8NB91 859 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 EPS8L1Q8TE68 723 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 TNFRSF25Q93038 417 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 CFAP36Q96G28 342 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 TIGARQ9NQ88 270 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 XPNPEP1Q9NQW7 623 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 PNPLA3Q9NST1 481 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 ASIC3Q9UHC3 531 aa9.71□□□□□ -0.85
CLIP1-214ENST00000540539 BRCA1P38398 1863 aaKnown RBP9.71□□□□□ -0.85
CLIP1-214ENST00000540539 ARHGEF37A1IGU5 675 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 CLDN25C9JDP6 229 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 GAS7O60861 476 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 IFIT1P09914 478 aaKnown RBP9.71□□□□□ -0.86
CLIP1-214ENST00000540539 RRM2P31350 389 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 GALCP54803 685 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 KRT17Q04695 432 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 CLCQ05315 142 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 UBAP2LQ14157 1087 aaKnown RBP9.71□□□□□ -0.86
CLIP1-214ENST00000540539 ARHGAP44Q17R89 818 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 TRIM72Q6ZMU5 477 aa9.71□□□□□ -0.86
CLIP1-214ENST00000540539 LILRA2Q8N149 483 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms