RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 EZRP15311 586 aaKnown RBP17.43■□□□□ 0.38
USP28-208ENST00000540438 TAF1CQ15572 869 aaPredicted RBP17.43■□□□□ 0.38
USP28-208ENST00000540438 RWDD4Q6NW29 188 aaKnown RBP17.43■□□□□ 0.38
USP28-208ENST00000540438 CEP128Q6ZU80 1094 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 SLC25A41Q8N5S1 370 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 POU5F2Q8N7G0 328 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 ZNF778Q96MU6 729 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 PACSIN3Q9UKS6 424 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 MOCS2O96007 188 aaPredicted RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 ETV4P43268 484 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 PDE1BQ01064 536 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 TTC39BQ5VTQ0 682 aaPredicted RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 ATG14Q6ZNE5 492 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 NPWQ8N729 165 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 GPR152Q8TDT2 470 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 PCED1BQ96HM7 432 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 SENP8Q96LD8 212 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 OXCT2Q9BYC2 517 aaPredicted RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 CPSF2Q9P2I0 782 aaKnown RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 NRCAMQ92823 1304 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 C5orf42Q9H799 3197 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 KRT37O76014 449 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 F2P00734 622 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 BDNFP23560 247 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 AQP5P55064 265 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 UBAP2LQ14157 1087 aaKnown RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 CERCAMQ5T4B2 595 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 ALKAL1Q6UXT8 129 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 ARHGAP36Q6ZRI8 547 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 RINLQ6ZS11 566 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 SLC26A9Q7LBE3 791 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 ZNF567Q8N184 647 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 L3MBTL3Q96JM7 780 aaPredicted RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 ZIC5Q96T25 663 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 EBNA1BP2Q99848 306 aaKnown RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 SENP1Q9P0U3 644 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 EEF2KO00418 725 aaKnown RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 TPP1O14773 563 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 MYCP01106 439 aaPredicted RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 TGM2P21980 687 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 MATKP42679 507 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 ACAP1Q15027 740 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 DPYSL2Q16555 572 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 SPRYD7Q5W111 196 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 MFSD3Q96ES6 412 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 OXNAD1Q96HP4 312 aaPredicted RBP17.42■□□□□ 0.38
USP28-208ENST00000540438 ZNF670Q9BS34 389 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 CNTN3Q9P232 1028 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 ST3GAL5Q9UNP4 418 aa17.42■□□□□ 0.38
USP28-208ENST00000540438 MSI1O43347 362 aaKnown RBP17.41■□□□□ 0.38
USP28-208ENST00000540438 ZMPSTE24O75844 475 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 ITGB1P05556 798 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 FYNP06241 537 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 ERCC2P18074 760 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 CCR10P46092 362 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 NEK3P51956 506 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 POU5F1BQ06416 359 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 HSF5Q4G112 596 aaPredicted RBP17.41■□□□□ 0.38
USP28-208ENST00000540438 IQSEC1Q6DN90 963 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 GIMAP7Q8NHV1 300 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 TSPYL2Q9H2G4 693 aaPredicted RBP17.41■□□□□ 0.38
USP28-208ENST00000540438 DENND2DQ9H6A0 471 aaPredicted RBP17.41■□□□□ 0.38
USP28-208ENST00000540438 AGO3Q9H9G7 860 aaKnown RBP17.41■□□□□ 0.38
USP28-208ENST00000540438 KIAA1257Q9ULG3 409 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 GNEQ9Y223 722 aaKnown RBP17.41■□□□□ 0.38
USP28-208ENST00000540438 RPS6KL1Q9Y6S9 549 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 LOC102724159A0A0B4J2E5 919 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 TTC24A2A3L6 582 aaPredicted RBP17.41■□□□□ 0.38
USP28-208ENST00000540438 CD1EP15812 388 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 NAA25Q14CX7 972 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 PWP2Q15269 919 aaKnown RBP17.41■□□□□ 0.38
USP28-208ENST00000540438 SH2D5Q6ZV89 423 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 CDKL3Q8IVW4 592 aaPredicted RBP17.41■□□□□ 0.38
USP28-208ENST00000540438 MAN1C1Q9NR34 630 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 CDY2AQ9Y6F7 541 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 PLXNA1Q9UIW2 1896 aa17.41■□□□□ 0.38
USP28-208ENST00000540438 BCLAF3A2AJT9 711 aaKnown RBP17.4■□□□□ 0.38
USP28-208ENST00000540438 B3GAT3O94766 335 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 HAUS5O94927 633 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 NPR3P17342 541 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 DESP17661 470 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 AVPR1AP37288 418 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 OTOP3Q7RTS5 596 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 TREML1Q86YW5 311 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 SPATA22Q8NHS9 363 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 FCRL3Q96P31 734 aaPredicted RBP17.4■□□□□ 0.38
USP28-208ENST00000540438 SMOQ99835 787 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 AP5M1Q9H0R1 490 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 FZD10Q9ULW2 581 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 SHROOM3Q8TF72 1996 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 CFAP73A6NFT4 308 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 H3BRJ5 948 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 MDM4O15151 490 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 ZNF865P0CJ78 1059 aaPredicted RBP17.4■□□□□ 0.38
USP28-208ENST00000540438 ZC3H15Q8WU90 426 aaKnown RBP17.4■□□□□ 0.38
USP28-208ENST00000540438 E2F7Q96AV8 911 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 NUDCD1Q96RS6 583 aa17.4■□□□□ 0.38
USP28-208ENST00000540438 RBM47A0AV96 593 aaKnown RBP17.39■□□□□ 0.38
USP28-208ENST00000540438 C17orf102A2RUQ5 167 aa17.39■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms