RNA–Protein interactions for RNA: ENST00000535452.5

CLSTN3-205, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-205ENST00000535452 FAM124AQ86V42 546 aa13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 SLC41A1Q8IVJ1 513 aa13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 SCML4Q8N228 414 aa13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 SLC35C1Q96A29 364 aa13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 MIS12Q9H081 205 aa13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 SLC6A17Q9H1V8 727 aa13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 ABCB8Q9NUT2 735 aa13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 DNAAF2Q9NVR5 837 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 USP36Q9P275 1121 aaKnown RBP13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 SCML1Q9UN30 329 aa13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 MYOFQ9NZM1 2061 aa13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 ABCA7Q8IZY2 2146 aa13.79□□□□□ -0.2
CLSTN3-205ENST00000535452 SPAARA0A1B0GVQ0 90 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 TRIM49BA6NDI0 452 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 YJEFN3A6XGL0 299 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 METTL12A8MUP2 240 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 E7ENQ6 273 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 ASLP04424 464 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 DLDP09622 509 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 MAOBP27338 520 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 AFF3P51826 1226 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 DAOAP59103 153 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 GRIK2Q13002 908 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 ENOSF1Q7L5Y1 443 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 NAXDQ8IW45 347 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 CARNMT1Q8N4J0 409 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 RBBP8NLQ8NC74 664 aaPredicted RBP13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 NELFBQ8WX92 580 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 ZCCHC14Q8WYQ9 949 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 PIWIL1Q96J94 861 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 NOX5Q96PH1 765 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 MED15Q96RN5 788 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 MKRN2Q9H000 416 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 FSCN3Q9NQT6 498 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 STIM2Q9P246 746 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 TPRP12270 2363 aaKnown RBP13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 ACACBO00763 2458 aa13.78□□□□□ -0.2
CLSTN3-205ENST00000535452 C1QTNF9BB2RNN3 333 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 PMM2O15305 246 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 ACSL4O60488 711 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 AFPP02771 609 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 C1QTNF9P0C862 333 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 HOXD9P28356 352 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 C21orf59P57076 290 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 GCNT1Q02742 428 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 RING1Q06587 406 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 MTA1Q13330 715 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 TPD52L1Q16890 204 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 MBLAC2Q68D91 279 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 ZNF776Q68DI1 518 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 ISM2Q6H9L7 571 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 FAM217AQ8IXS0 508 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 ELOA2Q8IYF1 753 aaPredicted RBP13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 DNASE2BQ8WZ79 361 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 RNF34Q969K3 372 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 CDC6Q99741 560 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 GAREM1Q9H706 876 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 SGK2Q9HBY8 427 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 EIF2B4Q9UI10 523 aaKnown RBP13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 ZMIZ1Q9ULJ6 1067 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 CTNND2Q9UQB3 1225 aa13.77□□□□□ -0.21
CLSTN3-205ENST00000535452 LRRC72A6NJI9 287 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 PIK3R2O00459 728 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 FLRT2O43155 660 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 MSI1O43347 362 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 HYAL3O43820 417 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 SEMA4FO95754 770 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 CHRM1P11229 460 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 SPINK2P20155 84 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 PRKCHP24723 683 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 HLA-FP30511 346 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 USP8P40818 1118 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 OXCT1P55809 520 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 MCCD1P59942 119 aaPredicted RBP13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 PAK1Q13153 545 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 ENPP2Q13822 863 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 SLC45A4Q5BKX6 768 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 MSANTD2Q6P1R3 559 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 RRAGAQ7L523 313 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 PIP4P1Q86T03 277 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 ZC3H3Q8IXZ2 948 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 CYB5D2Q8WUJ1 264 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 SORCS1Q8WY21 1168 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 NDRG1Q92597 394 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 AZIN2Q96A70 460 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 OMDQ99983 421 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 SYNCQ9H7C4 482 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 TM7SF3Q9NS93 570 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 STOML2Q9UJZ1 356 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 HCN2Q9UL51 889 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 TLR6Q9Y2C9 796 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 MSRB2Q9Y3D2 182 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 CNOT1A5YKK6 2376 aaKnown RBP13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 CACNA1BQ00975 2339 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 PLXND1Q9Y4D7 1925 aa13.76□□□□□ -0.21
CLSTN3-205ENST00000535452 TULP2O00295 520 aa13.75□□□□□ -0.21
CLSTN3-205ENST00000535452 SH3BP5O60239 455 aa13.75□□□□□ -0.21
CLSTN3-205ENST00000535452 DFNA5O60443 496 aa13.75□□□□□ -0.21
CLSTN3-205ENST00000535452 FSBPO95073 299 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms