RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 MSANTD2Q6P1R3 559 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 ANKS1BQ7Z6G8 1248 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 TRABD2AQ86V40 505 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 ANKRD13BQ86YJ7 626 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 FSTL5Q8N475 847 aaPredicted RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 METTL25Q8N6Q8 603 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 MYCBPAPQ8TBZ2 947 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 GLG1Q92896 1179 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 DVL3Q92997 716 aaPredicted RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 RILPL2Q969X0 211 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 ATP6V1E2Q96A05 226 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 SH3KBP1Q96B97 665 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 C8orf49Q96NF6 230 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 TRAPPC9Q96Q05 1148 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 NUDT16L1Q9BRJ7 211 aaKnown RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 SLC26A6Q9BXS9 759 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 KRTAP3-1Q9BYR8 98 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 VPS16Q9H269 839 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 TAF1DQ9H5J8 278 aaPredicted RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 GLOD4Q9HC38 313 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 G6PC2Q9NQR9 355 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 SMPD4Q9NXE4 827 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 NKX1-2Q9UD57 310 aaPredicted RBP5.24□□□□□ -1.57
CD44-220ENST00000525688 MAFFQ9ULX9 164 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 CNTN6Q9UQ52 1028 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 CRYL1Q9Y2S2 319 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 DISP3Q9P2K9 1392 aa5.24□□□□□ -1.57
CD44-220ENST00000525688 ANKRD50Q9ULJ7 1429 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 ABCC3O15438 1527 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 DEPDC5O75140 1603 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 SYNDIG1LA6NDD5 238 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 A8MVJ9 347 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 KIAA0355O15063 1070 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 TIPRLO75663 272 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 ONECUT2O95948 504 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 LMNAP02545 664 aaKnown RBP5.23□□□□□ -1.57
CD44-220ENST00000525688 ERBB2P04626 1255 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 PDHA1P08559 390 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 AARSP49588 968 aaKnown RBP eCLIP5.23□□□□□ -1.57
CD44-220ENST00000525688 MCM2P49736 904 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 ACTR2P61160 394 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 TLE2Q04725 743 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 FZD5Q13467 585 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 PTPRRQ15256 657 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 CDSNQ15517 529 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 SMAD1Q15797 465 aaKnown RBP5.23□□□□□ -1.57
CD44-220ENST00000525688 ST3GAL2Q16842 350 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 TIGD2Q4W5G0 525 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 ZNF618Q5T7W0 954 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 PLBD1Q6P4A8 553 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 PIK3AP1Q6ZUJ8 805 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 MAVSQ7Z434 540 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 C2CD5Q86YS7 1000 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 CPOQ8IVL8 374 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 SYNE4Q8N205 404 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 ARL10Q8N8L6 244 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 C11orf44Q8N8P7 122 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 SUPT20HQ8NEM7 779 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 ASB12Q8WXK4 309 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 OVCA2Q8WZ82 227 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 FKBP10Q96AY3 582 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 CTHRC1Q96CG8 243 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 VMP1Q96GC9 406 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 SPAG5Q96R06 1193 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 ALG8Q9BVK2 526 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 MRPL9Q9BYD2 267 aaKnown RBP5.23□□□□□ -1.57
CD44-220ENST00000525688 LMAN2LQ9H0V9 348 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 PLEKHA5Q9HAU0 1116 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 KLC4Q9NSK0 619 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 NDUFAF4Q9P032 175 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 SLC13A4Q9UKG4 626 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 GABRQQ9UN88 632 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 TMEM98Q9Y2Y6 226 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 TSC22D4Q9Y3Q8 395 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 PZPP20742 1482 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 PREX1Q8TCU6 1659 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 ARHGAP31Q2M1Z3 1444 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 UHRF1BP1Q6BDS2 1440 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 ADGRA2Q96PE1 1338 aa5.23□□□□□ -1.57
CD44-220ENST00000525688 ZC3H13Q5T200 1668 aaKnown RBP5.22□□□□□ -1.57
CD44-220ENST00000525688 VWDEQ8N2E2 1590 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 CENPVL1A0A0U1RR11 272 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 UNC119BA6NIH7 251 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 CTIFO43310 598 aaKnown RBP5.22□□□□□ -1.57
CD44-220ENST00000525688 RPP40O75818 363 aaKnown RBP5.22□□□□□ -1.57
CD44-220ENST00000525688 LARGE1O95461 756 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 VNN1O95497 513 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 IL6RP08887 468 aaPredicted RBP5.22□□□□□ -1.57
CD44-220ENST00000525688 AKT1P31749 480 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 CTNNA1P35221 906 aaKnown RBP5.22□□□□□ -1.57
CD44-220ENST00000525688 LIPAP38571 399 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 DGKQP52824 942 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 HSPA2P54652 639 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 BPIFB3P59826 476 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 EIF4A1P60842 406 aaKnown RBP5.22□□□□□ -1.57
CD44-220ENST00000525688 PLIN5Q00G26 463 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 KCNJ12Q14500 433 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 BTBD16Q32M84 506 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 SLC45A4Q5BKX6 768 aa5.22□□□□□ -1.57
CD44-220ENST00000525688 RILPL1Q5EBL4 403 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms