RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 SOAT2O75908 522 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 FOSP01100 380 aaPredicted RBP7.91□□□□□ -1.14
SDCBP-208ENST00000520228 TSPY3P0CV98 308 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 TSPY8P0CW00 308 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 EEF2P13639 858 aaKnown RBP7.91□□□□□ -1.14
SDCBP-208ENST00000520228 CHRM3P20309 590 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 CHMLP26374 656 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 GCLCP48506 637 aaPredicted RBP7.91□□□□□ -1.14
SDCBP-208ENST00000520228 CASP5P51878 434 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 WNT3P56703 355 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 TFAP4Q01664 338 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 RAB32Q13637 225 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 CD300EQ496F6 205 aaPredicted RBP7.91□□□□□ -1.14
SDCBP-208ENST00000520228 LONRF3Q496Y0 759 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 C3orf38Q5JPI3 329 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 SKAP1Q86WV1 359 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 SLC15A4Q8N697 577 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 ANKRD13CQ8N6S4 541 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 ABHD8Q96I13 439 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 SLC46A1Q96NT5 459 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 UNKQ9C0B0 810 aaKnown RBP7.91□□□□□ -1.14
SDCBP-208ENST00000520228 ARHGAP39Q9C0H5 1083 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 RPAP3Q9H6T3 665 aaPredicted RBP7.91□□□□□ -1.14
SDCBP-208ENST00000520228 RAD54BQ9Y620 910 aa7.91□□□□□ -1.14
SDCBP-208ENST00000520228 ZMYM6O95789 1325 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 TMEM233B4DJY2 109 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 FOXN3O00409 490 aaPredicted RBP7.9□□□□□ -1.14
SDCBP-208ENST00000520228 TOR1BO14657 336 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 RANBP6O60518 1105 aaKnown RBP7.9□□□□□ -1.14
SDCBP-208ENST00000520228 GATA3P23771 443 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 PSMC4P43686 418 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 NEK3P51956 506 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 HAND2P61296 217 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 FPGSQ05932 587 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 LCE1DQ5T752 114 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 FBXO46Q6PJ61 603 aaPredicted RBP7.9□□□□□ -1.14
SDCBP-208ENST00000520228 CATSPERGQ6ZRH7 1159 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 MICALCLQ6ZW33 695 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 GPR149Q86SP6 731 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 COLGALT2Q8IYK4 626 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 SPICE1Q8N0Z3 855 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 OR56A3Q8NH54 315 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 LPAR1Q92633 364 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 MESP1Q9BRJ9 268 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 VCPKMTQ9H867 229 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 MMRN2Q9H8L6 949 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 A1CFQ9NQ94 594 aaKnown RBP7.9□□□□□ -1.14
SDCBP-208ENST00000520228 MTMR4Q9NYA4 1195 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 NYAP2Q9P242 653 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 ANKFY1Q9P2R3 1169 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 CLIP2Q9UDT6 1046 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 CTNNA3Q9UI47 895 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 PHTF1Q9UMS5 762 aa7.9□□□□□ -1.14
SDCBP-208ENST00000520228 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.9□□□□□ -1.14
SDCBP-208ENST00000520228 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.9□□□□□ -1.14
SDCBP-208ENST00000520228 OTOFQ9HC10 1997 aa7.9□□□□□ -1.15
SDCBP-208ENST00000520228 RAD50Q92878 1312 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 IGKV6D-41A0A0C4DH26 115 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 MBD3L4A6NDZ8 208 aaPredicted RBP7.89□□□□□ -1.15
SDCBP-208ENST00000520228 MBD3L3A6NE82 208 aaPredicted RBP7.89□□□□□ -1.15
SDCBP-208ENST00000520228 TSPY2A6NKD2 308 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 RHPN2P1A8MT19 583 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 NPIPB8E9PQR5 432 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 ZNF213O14771 459 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 ORC4O43929 436 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 TTLL1O95922 423 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 ATXN1LP0C7T5 689 aaKnown RBP7.89□□□□□ -1.15
SDCBP-208ENST00000520228 EGR2P11161 476 aaPredicted RBP7.89□□□□□ -1.15
SDCBP-208ENST00000520228 HOXD10P28358 340 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 PRIM2P49643 509 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 ALDH5A1P51649 535 aaPredicted RBP7.89□□□□□ -1.15
SDCBP-208ENST00000520228 ZNF134P52741 427 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 RPS16P62249 146 aaKnown RBP7.89□□□□□ -1.15
SDCBP-208ENST00000520228 HTRA4P83105 476 aaPredicted RBP7.89□□□□□ -1.15
SDCBP-208ENST00000520228 ZNF543Q08ER8 600 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 COG2Q14746 738 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 IQCB1Q15051 598 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 IMMTQ16891 758 aaKnown RBP7.89□□□□□ -1.15
SDCBP-208ENST00000520228 FAM110CQ1W6H9 321 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 BMP2KLQ5H9B9 411 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 KIAA1755Q5JYT7 1200 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 AKNAD1Q5T1N1 836 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 MFSD6Q6ZSS7 791 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 GAS2L3Q86XJ1 694 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 FAM109AQ8N4B1 249 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 GPRC5AQ8NFJ5 357 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 PROKR1Q8TCW9 393 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 ASB10Q8WXI3 467 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 TMEM125Q96AQ2 219 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 TBCBQ99426 244 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 IL25Q9H293 177 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 RNF41Q9H4P4 317 aaPredicted RBP7.89□□□□□ -1.15
SDCBP-208ENST00000520228 HOXC10Q9NYD6 342 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 MORF4L1Q9UBU8 362 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 CORO2BQ9UQ03 480 aa7.89□□□□□ -1.15
SDCBP-208ENST00000520228 MYO5AQ9Y4I1 1855 aaKnown RBP7.88□□□□□ -1.15
SDCBP-208ENST00000520228 PIPSLA2A3N6 862 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 F5H6K3 240 aa7.88□□□□□ -1.15
SDCBP-208ENST00000520228 TNPO2O14787 897 aaKnown RBP7.88□□□□□ -1.15
SDCBP-208ENST00000520228 WDR46O15213 610 aaKnown RBP7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms