RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TCF7L2Q9NQB0 619 aa12□□□□□ -0.49
SYNPO-204ENST00000519664 CORO1CQ9ULV4 474 aaPredicted RBP12□□□□□ -0.49
SYNPO-204ENST00000519664 MAGEA13PA6NCF6 341 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 A8MUI8 341 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 UNC5CO95185 931 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 ERBB2P04626 1255 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 SCNN1BP51168 640 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 SLC25A3Q00325 362 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 SLC1A5Q15758 541 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 KCNMB4Q86W47 210 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 DIS3LQ8TF46 1054 aaKnown RBP11.99□□□□□ -0.49
SYNPO-204ENST00000519664 PYDC1Q8WXC3 89 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 LZICQ8WZA0 190 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 RUBCNLQ9H714 662 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 NRDE2Q9H7Z3 1164 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 MRPL40Q9NQ50 206 aaKnown RBP11.99□□□□□ -0.49
SYNPO-204ENST00000519664 DRG1Q9Y295 367 aaKnown RBP11.99□□□□□ -0.49
SYNPO-204ENST00000519664 NR2E3Q9Y5X4 410 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 AP3B1O00203 1094 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 STX7O15400 261 aaKnown RBP11.99□□□□□ -0.49
SYNPO-204ENST00000519664 PSMD3O43242 534 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 TMCC1O94876 653 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 PLOD1Q02809 727 aaPredicted RBP11.99□□□□□ -0.49
SYNPO-204ENST00000519664 AGKQ53H12 422 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 DCAF12L1Q5VU92 463 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 POTEAQ6S8J7 498 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 UNC5AQ6ZN44 842 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 OTOAQ7RTW8 1153 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 GPC2Q8N158 579 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 PCYOX1LQ8NBM8 494 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 PBXIP1Q96AQ6 731 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 NRBF2Q96F24 287 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 HAUS8Q9BT25 410 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 DTNAQ9Y4J8 743 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 ESRRBO95718 433 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 NFKBIAP25963 317 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 AKT1P31749 480 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 GBE1Q04446 702 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 TBL3Q12788 808 aaKnown RBP11.99□□□□□ -0.49
SYNPO-204ENST00000519664 LRRC38Q5VT99 294 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 AGAP9Q5VTM2 703 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 ANKRD22Q5VYY1 191 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 CCNJLQ8IV13 435 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 CLEC4FQ8N1N0 589 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 LPPQ93052 612 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 CNDP1Q96KN2 507 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 NXF3Q9H4D5 531 aaKnown RBP11.99□□□□□ -0.49
SYNPO-204ENST00000519664 ZFYVE28Q9HCC9 887 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 THAP1Q9NVV9 213 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 STX18Q9P2W9 335 aaKnown RBP11.99□□□□□ -0.49
SYNPO-204ENST00000519664 AAR2Q9Y312 384 aaKnown RBP11.99□□□□□ -0.49
SYNPO-204ENST00000519664 TPP1O14773 563 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 TUBP50607 506 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 SCNN1GP51170 649 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 PKNOX1P55347 436 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 GALNTL6Q49A17 601 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 PLEKHA7Q6IQ23 1121 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 TMPRSS6Q8IU80 811 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 FAM81AQ8TBF8 368 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 MARK4Q96L34 752 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 EFCAB1Q9HAE3 211 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 GRHL1Q9NZI5 618 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 LMCD1Q9NZU5 365 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 OR12D3Q9UGF7 316 aa11.99□□□□□ -0.49
SYNPO-204ENST00000519664 GPR25O00155 361 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 ALOX15BO15296 676 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 TRIM13O60858 407 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 ITGAVP06756 1048 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 TCF4P15884 667 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 GRK2P25098 689 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 GEMP55040 296 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 PDK4Q16654 411 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 TEDDM1Q5T9Z0 273 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 MAGEC3Q8TD91 643 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 OMDQ99983 421 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 MRPL45Q9BRJ2 306 aaKnown RBP11.98□□□□□ -0.49
SYNPO-204ENST00000519664 SLC8A2Q9UPR5 921 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 CRYL1Q9Y2S2 319 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 SRRM3A6NNA2 597 aaPredicted RBP11.98□□□□□ -0.49
SYNPO-204ENST00000519664 THRAP10827 490 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 HARS2P49590 506 aaKnown RBP11.98□□□□□ -0.49
SYNPO-204ENST00000519664 SLC45A4Q5BKX6 768 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 OLFML2BQ68BL8 750 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 CMC1Q7Z7K0 106 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 CYP4X1Q8N118 509 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 PLEKHO2Q8TD55 490 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 ACSS3Q9H6R3 686 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 SMPD4Q9NXE4 827 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 SRP72O76094 671 aaKnown RBP11.98□□□□□ -0.49
SYNPO-204ENST00000519664 PGK1P00558 417 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 LTFP02788 710 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 SERPINE1P05121 402 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 TSPAN8P19075 237 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 CDK16Q00536 496 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 DSG1Q02413 1049 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 DDX39BQ13838 428 aaKnown RBP11.98□□□□□ -0.49
SYNPO-204ENST00000519664 CTXN3Q4LDR2 81 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 MON1BQ7L1V2 547 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 HS6ST3Q8IZP7 471 aa11.98□□□□□ -0.49
SYNPO-204ENST00000519664 ZSCAN18Q8TBC5 510 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms