RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 OLIG1Q8TAK6 271 aa20.97■□□□□ 0.95
USP53-208ENST00000514305 EXOC4Q96A65 974 aa20.97■□□□□ 0.95
USP53-208ENST00000514305 DCLK3Q9C098 648 aa20.97■□□□□ 0.95
USP53-208ENST00000514305 EBF3Q9H4W6 596 aa20.97■□□□□ 0.95
USP53-208ENST00000514305 UVRAGQ9P2Y5 699 aa20.97■□□□□ 0.95
USP53-208ENST00000514305 MYO1AQ9UBC5 1043 aa20.97■□□□□ 0.95
USP53-208ENST00000514305 SLC12A6Q9UHW9 1150 aa20.97■□□□□ 0.95
USP53-208ENST00000514305 USP18Q9UMW8 372 aa20.97■□□□□ 0.95
USP53-208ENST00000514305 ZNF510Q9Y2H8 683 aa20.97■□□□□ 0.95
USP53-208ENST00000514305 SOWAHDA6NJG2 315 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 GRAP2O75791 330 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 SLC2A3P11169 496 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 CNR2P34972 360 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 GRSF1Q12849 480 aaKnown RBP eCLIP20.96■□□□□ 0.95
USP53-208ENST00000514305 PDGFRLQ15198 375 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 TRIM68Q6AZZ1 485 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 LAIR1Q6GTX8 287 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 LONP2Q86WA8 852 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 UNC45BQ8IWX7 931 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 RHOT2Q8IXI1 618 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 TTC16Q8NEE8 873 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 HPS4Q9NQG7 708 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 OSER1Q9NX31 292 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 TMEM59LQ9UK28 342 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 NAALADL1Q9UQQ1 740 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 SH3BP1Q9Y3L3 701 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 CPQQ9Y646 472 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 GPR179Q6PRD1 2367 aa20.96■□□□□ 0.95
USP53-208ENST00000514305 SLC12A8A0AV02 714 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 C2orf72A6NCS6 295 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 CHURC1-FNTBB4DL54 471 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 SLC9A3R1O14745 358 aaPredicted RBP20.95■□□□□ 0.94
USP53-208ENST00000514305 PDGFRAP16234 1089 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 GPD1P21695 349 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 FNTBP49356 437 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 HARS2P49590 506 aaKnown RBP20.95■□□□□ 0.94
USP53-208ENST00000514305 LMNB2Q03252 620 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 MAMLD1Q13495 774 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 SIM2Q14190 667 aaPredicted RBP20.95■□□□□ 0.94
USP53-208ENST00000514305 LPAL2Q16609 132 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 RSPO4Q2I0M5 234 aaPredicted RBP20.95■□□□□ 0.94
USP53-208ENST00000514305 SLC25A52Q3SY17 297 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 HEATR6Q6AI08 1181 aaKnown RBP20.95■□□□□ 0.94
USP53-208ENST00000514305 MIB1Q86YT6 1006 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 PLD4Q96BZ4 506 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 CYP2S1Q96SQ9 504 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 RNF38Q9H0F5 515 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 THAP2Q9H0W7 228 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 NENFQ9UMX5 172 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 PCDHA13Q9Y5I0 950 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 RALGAPA1Q6GYQ0 2036 aa20.95■□□□□ 0.94
USP53-208ENST00000514305 PRR5-ARHGAP8B1AHC4 643 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 K7ESF4 209 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 CYP1A2P05177 515 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 ARHGAP8P85298 464 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 MTF1Q14872 753 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 ACAP1Q15027 740 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 TAF5Q15542 800 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 TMEM196Q5HYL7 178 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 NUGGCQ68CJ6 796 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 PHLDB2Q86SQ0 1253 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 KIAA1328Q86T90 577 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 CPA6Q8N4T0 437 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 DQX1Q8TE96 717 aaKnown RBP20.94■□□□□ 0.94
USP53-208ENST00000514305 FNIP1Q8TF40 1166 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 RNF34Q969K3 372 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 MCEEQ96PE7 176 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 FAM204AQ9H8W3 233 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 DLL3Q9NYJ7 618 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 CTTNBP2NLQ9P2B4 639 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 TBC1D14Q9P2M4 693 aa20.94■□□□□ 0.94
USP53-208ENST00000514305 MYO16Q9Y6X6 1858 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 FAM170AA1A519 330 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 MYO1FO00160 1098 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 ATG13O75143 517 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 RNF8O76064 485 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 TRUB2O95900 331 aaKnown RBP20.93■□□□□ 0.94
USP53-208ENST00000514305 TBX18O95935 607 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 APOEP02649 317 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 FYNP06241 537 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 ARSAP15289 507 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 PTPN9P43378 593 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 IFNAR2P48551 515 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 PGFP49763 221 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 SULT1E1P49888 294 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 TBX4P57082 545 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 RING1Q06587 406 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 DMWDQ09019 674 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 TRIP4Q15650 581 aaPredicted RBP20.93■□□□□ 0.94
USP53-208ENST00000514305 ACBD5Q5T8D3 534 aaPredicted RBP20.93■□□□□ 0.94
USP53-208ENST00000514305 TMEM139Q8IV31 216 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 SH3RF2Q8TEC5 729 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 RXFP2Q8WXD0 754 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 ATP2A3Q93084 1043 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 PGAP3Q96FM1 320 aaPredicted RBP20.93■□□□□ 0.94
USP53-208ENST00000514305 PIWIL1Q96J94 861 aaKnown RBP20.93■□□□□ 0.94
USP53-208ENST00000514305 PPP1R9BQ96SB3 815 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 NUP85Q9BW27 656 aa20.93■□□□□ 0.94
USP53-208ENST00000514305 KLF16Q9BXK1 252 aaPredicted RBP20.93■□□□□ 0.94
USP53-208ENST00000514305 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms