RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ST8SIA6P61647 398 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 GALNT3Q14435 633 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 SGO1Q5FBB7 561 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 MAGEB10Q96LZ2 347 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 SLC38A2Q96QD8 506 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 EIF2AK1Q9BQI3 630 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 POLR3FQ9H1D9 316 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 XKR8Q9H6D3 395 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 LY9Q9HBG7 655 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 TMEM165Q9HC07 324 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 PLCL2Q9UPR0 1127 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 PTPRTO14522 1441 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 H3BN98 237 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 STX16-NPEPL1H3BU86 382 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 STX16O14662 325 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 MYBL2P10244 700 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 NOS3P29474 1203 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 SDC2P34741 201 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 ADAM17P78536 824 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 ZNF844Q08AG5 666 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 PPM1LQ5SGD2 360 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 ANKS6Q68DC2 871 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 RNF19BQ6ZMZ0 732 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 GALNT15Q8N3T1 639 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 RP9Q8TA86 221 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 FIG4Q92562 907 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 NT5C1AQ9BXI3 368 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 C17orf75Q9HAS0 396 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 SNX7Q9UNH6 387 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 DYRK1BQ9Y463 629 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 GMPPBQ9Y5P6 360 aa11.48□□□□□ -0.57
LIMCH1-217ENST00000512946 KIF21AQ7Z4S6 1674 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 PDLIM1O00151 329 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ALDH1A2O94788 518 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 OR6B1O95007 311 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 LBPP18428 481 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ADORA2BP29275 332 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ADORA1P30542 326 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 NCOA4Q13772 614 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 NR6A1Q15406 480 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 OLFML2AQ68BL7 652 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 EIF5AL1Q6IS14 154 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ZNF438Q7Z4V0 828 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 SRBD1Q8N5C6 995 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 IPMKQ8NFU5 416 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 REPS1Q96D71 796 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 MARCH7Q9H992 704 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 PNPLA8Q9NP80 782 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 TBX22Q9Y458 520 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 PCDHA10Q9Y5I2 948 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 A0A1W2PQ72 361 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 M0QX08 132 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ORC5O43913 435 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 FCER1AP12319 257 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 GRK3P35626 688 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ALDH3A2P51648 485 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 PSME3P61289 254 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 EIF2S3LQ2VIR3 472 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 SLC9A4Q6AI14 798 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 FRMD7Q6ZUT3 714 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 SNX32Q86XE0 403 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 OR56A4Q8NGH8 313 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 C18orf25Q96B23 403 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 CCDC115Q96NT0 180 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 LXNQ9BS40 222 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 MTG1Q9BT17 334 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 SPATA5L1Q9BVQ7 753 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 NIF3L1Q9GZT8 377 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 NOL11Q9H8H0 719 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 GDF3Q9NR23 364 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 PNMA3Q9UL41 463 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 MOCS2O96007 188 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 CASP1P29466 404 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 RPL22P35268 128 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 IL6STP40189 918 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 SPIDRQ14159 915 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ACCSLQ4AC99 568 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 MSANTD1Q6ZTZ1 278 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 SLC44A2Q8IWA5 706 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ANKRD13AQ8IZ07 590 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 OR8H1Q8NGG4 311 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 HDAC7Q8WUI4 952 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 TBC1D10AQ9BXI6 508 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 MED28Q9H204 178 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 TRNAU1APQ9NX07 287 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ZC3H4Q9UPT8 1303 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 NPHP3-ACAD11A0A0J9YXS1 232 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 CRTAMO95727 393 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 DBTP11182 482 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 NPR2P20594 1047 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 PCSK1P29120 753 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ETFBP38117 255 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 PTGES3Q15185 160 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 ERMARDQ5T6L9 678 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 XKRXQ6PP77 449 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 CPNE1Q99829 537 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 APOL5Q9BWW9 433 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 KCTD10Q9H3F6 313 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 MORF4L1Q9UBU8 362 aa11.47□□□□□ -0.57
LIMCH1-217ENST00000512946 TRIM10Q9UDY6 481 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms