RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 KCNMB4Q86W47 210 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 ZNF786Q8N393 782 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 REPS2Q8NFH8 660 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 PABPC5Q96DU9 382 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 SPATC1LQ9H0A9 340 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 CDT1Q9H211 546 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 ADAM7Q9H2U9 754 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 TAS2R1Q9NYW7 299 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 FZD1Q9UP38 647 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 RIPK3Q9Y572 518 aa8.63□□□□□ -1.03
LIMCH1-216ENST00000512820 GOLGA8TH3BQL2 631 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 CYB561D2O14569 222 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 DHX15O43143 795 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 DYNC1LI2O43237 492 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 TM7SF2O76062 418 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 DDHD2O94830 711 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 SUPT7LO94864 414 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 VNN1O95497 513 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 HSPA1AP0DMV8 641 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 HSPA1BP0DMV9 641 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 CYP2C9P11712 490 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 MYL4P12829 197 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 COX4I1P13073 169 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ACO1P21399 889 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ME2P23368 584 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 GABRB2P47870 512 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 YWHAZP63104 245 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 AGAP9Q5VTM2 703 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 EEF1DP3Q658K8 133 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 FRA10AC1Q70Z53 315 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ARHGAP22Q7Z5H3 698 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 XYLT1Q86Y38 959 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 DEFB106AQ8N104 65 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ACMSDQ8TDX5 336 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 FNIP1Q8TF40 1166 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 TFAP2BQ92481 460 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 FAR2Q96K12 515 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 C7orf26Q96N11 449 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 COPS7BQ9H9Q2 264 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 DDX18Q9NVP1 670 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 SNTG2Q9NY99 539 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 HBS1LQ9Y450 684 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ROBO1Q9Y6N7 1651 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 CLUHO75153 1309 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 MAGEB16A2A368 324 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 MAGEC1O60732 1142 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 SMNDC1O75940 238 aaKnown RBP eCLIP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 KCNA2P16389 499 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 YY1P25490 414 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 MAP4P27816 1152 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ALDH1A3P47895 512 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 CHN2P52757 468 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 AAGABQ6PD74 315 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 TTC7BQ86TV6 843 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 CHSY1Q86X52 802 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 B4GALNT2Q8NHY0 566 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 C7orf43Q8WVR3 580 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ZNF670Q9BS34 389 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 MAN1C1Q9NR34 630 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 AAASQ9NRG9 546 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 NWD2Q9ULI1 1742 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 B4GALT5O43286 388 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 TNFAIP8O95379 198 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 PTPRAP18433 802 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 PSMB4P28070 264 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 LBRQ14739 615 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 TMEM132BQ14DG7 1078 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 PDK3Q15120 406 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ANO4Q32M45 955 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 AGKQ53H12 422 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ACSBG2Q5FVE4 666 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ZFP1Q6P2D0 407 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ADGRF2Q8IZF7 708 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 SNRNP27Q8WVK2 155 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 DDX1Q92499 740 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ADNPQ9H2P0 1102 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 PNPOQ9NVS9 261 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 GID8Q9NWU2 228 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 TNFSF13BQ9Y275 285 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 AAR2Q9Y312 384 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 TMEM63AO94886 807 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 PIGNO95427 931 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ITGA2BP08514 1039 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 SLC18A1P54219 525 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ENPEPQ07075 957 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 TAF5Q15542 800 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 RBBP7Q16576 425 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 FBXO47Q5MNV8 452 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 UBAP2Q5T6F2 1119 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 TXNRD3NBQ6F5E7 133 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ZBTB49Q6ZSB9 765 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 C10orf107Q8IVU9 208 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 SLC35B2Q8TB61 432 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 FBXL18Q96ME1 805 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 UBE2OQ9C0C9 1292 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 PCDH18Q9HCL0 1135 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 TBC1D23Q9NUY8 699 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 ETAA1Q9NY74 926 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 FETUBQ9UGM5 382 aa8.62□□□□□ -1.03
LIMCH1-216ENST00000512820 PCDHGC3Q9UN70 934 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms