RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 PCYT1AP49585 367 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 MTAPQ13126 283 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 CNN3Q15417 329 aaKnown RBP3.32□□□□□ -1.88
NUP54-208ENST00000508604 SHBQ15464 509 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 TTLL5Q6EMB2 1281 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 RHPN2Q8IUC4 686 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 C7orf57Q8NEG2 295 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 SUN3Q8TAQ9 357 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 ABHD5Q8WTS1 349 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 SELENOOQ9BVL4 669 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 LRRC27Q9C0I9 530 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 TMEM60Q9H2L4 133 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 ZNF287Q9HBT7 754 aa3.32□□□□□ -1.88
NUP54-208ENST00000508604 GAGE12JA6NER3 117 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 BTBD18B2RXH4 712 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 KLKB1P03952 638 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 CYP1A2P05177 515 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 MYBP10242 640 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 DRD1P21728 446 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 HOXD3P31249 432 aaPredicted RBP3.31□□□□□ -1.88
NUP54-208ENST00000508604 PBX1P40424 430 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 ZNF84P51523 738 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 CACNB3P54284 484 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 POU3F1Q03052 451 aaPredicted RBP3.31□□□□□ -1.88
NUP54-208ENST00000508604 CRYZQ08257 329 aaKnown RBP3.31□□□□□ -1.88
NUP54-208ENST00000508604 DSC1Q08554 894 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 PIN1Q13526 163 aaPredicted RBP3.31□□□□□ -1.88
NUP54-208ENST00000508604 PGM5Q15124 567 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 APOA5Q6Q788 366 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 Q6ZTK2 550 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 UNC13DQ70J99 1090 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 OVCH2Q7RTZ1 564 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 ZFPM2Q8WW38 1151 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 RHOBTB2Q9BYZ6 727 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 CDCP1Q9H5V8 836 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 KRCC1Q9NPI7 259 aaPredicted RBP3.31□□□□□ -1.88
NUP54-208ENST00000508604 CAPN11Q9UMQ6 739 aa3.31□□□□□ -1.88
NUP54-208ENST00000508604 A0A087WYN8 130 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 CCNT2O60583 730 aaKnown RBP3.3□□□□□ -1.88
NUP54-208ENST00000508604 IL1R1P14778 569 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 FMO1Q01740 532 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 GAB1Q13480 694 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 TTC39AQ5SRH9 613 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 OTUD1Q5VV17 481 aaPredicted RBP3.3□□□□□ -1.88
NUP54-208ENST00000508604 HMBOX1Q6NT76 420 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 SPSB3Q6PJ21 355 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 CYB5R4Q7L1T6 521 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 OR52L2PQ8NGH6 319 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 INPP5DQ92835 1189 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 NCKIPSDQ9NZQ3 722 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 COL20A1Q9P218 1284 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 CGAP01215 116 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 U2AF1L5P0DN76 240 aaPredicted RBP3.3□□□□□ -1.88
NUP54-208ENST00000508604 ERVFC1-1P60608 527 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 U2AF1Q01081 240 aaKnown RBP eCLIP3.3□□□□□ -1.88
NUP54-208ENST00000508604 SEMA3BQ13214 749 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 ELF2Q15723 593 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 Q5PR19 223 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 KYAT3Q6YP21 454 aaKnown RBP3.3□□□□□ -1.88
NUP54-208ENST00000508604 KIAA0319LQ8IZA0 1049 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 PRR26Q8N8Z3 221 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 ASB12Q8WXK4 309 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 EIF3CQ99613 913 aaKnown RBP3.3□□□□□ -1.88
NUP54-208ENST00000508604 FAM204AQ9H8W3 233 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 PLAC1Q9HBJ0 212 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 TBC1D23Q9NUY8 699 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 FZD10Q9ULW2 581 aa3.3□□□□□ -1.88
NUP54-208ENST00000508604 NTN3O00634 580 aaPredicted RBP3.29□□□□□ -1.88
NUP54-208ENST00000508604 ALDH1L1O75891 902 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 NFATC1O95644 943 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 PLGP00747 810 aaPredicted RBP3.29□□□□□ -1.88
NUP54-208ENST00000508604 IBSPP21815 317 aaPredicted RBP3.29□□□□□ -1.88
NUP54-208ENST00000508604 STAT6P42226 847 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 AGTR2P50052 363 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 DMWDQ09019 674 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 TRAF2Q12933 501 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 PPP4R4Q6NUP7 873 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 TPH2Q8IWU9 490 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 OVCA2Q8WZ82 227 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 HES6Q96HZ4 224 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 ZNF556Q9HAH1 456 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 HEYLQ9NQ87 328 aaPredicted RBP3.29□□□□□ -1.88
NUP54-208ENST00000508604 RXFP3Q9NSD7 469 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 TMOD4Q9NZQ9 345 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 L1RE1Q9UN81 338 aa3.29□□□□□ -1.88
NUP54-208ENST00000508604 SPRY3O43610 288 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 MGEA5O60502 916 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 GSTM5P46439 218 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 GPS1Q13098 491 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 GPR18Q14330 331 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.28□□□□□ -1.88
NUP54-208ENST00000508604 ACSM6Q6P461 480 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 ZNF474Q6S9Z5 364 aaPredicted RBP3.28□□□□□ -1.88
NUP54-208ENST00000508604 PRSS57Q6UWY2 283 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 FAM83HQ6ZRV2 1179 aaPredicted RBP3.28□□□□□ -1.88
NUP54-208ENST00000508604 RNF44Q7L0R7 432 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 CTU1Q7Z7A3 348 aaKnown RBP3.28□□□□□ -1.88
NUP54-208ENST00000508604 WBP2Q969T9 261 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 SNX22Q96L94 193 aa3.28□□□□□ -1.88
NUP54-208ENST00000508604 ABHD14AQ9BUJ0 271 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms