RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CYS1Q717R9 158 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 ZDHHC17Q8IUH5 632 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 CCDC185Q8N715 623 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 C16orf70Q9BSU1 422 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 BEGAINQ9BUH8 593 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 XAB2Q9HCS7 855 aaKnown RBP16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 DTLQ9NZJ0 730 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 AP4E1Q9UPM8 1137 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 USP3Q9Y6I4 520 aa16.58■□□□□ 0.25
MSH5-SAPCD1-208ENST00000498473 EME2A4GXA9 379 aaPredicted RBP16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 B2RBV5 119 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TBX10O75333 385 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DGKIO75912 1065 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 KITP10721 976 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 VAV1P15498 845 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZFXP17010 805 aaPredicted RBP16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PGM1P36871 562 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 VHLP40337 213 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 NR2C2P49116 596 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 AQP5P55064 265 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZBTB6Q15916 424 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ARHGAP17Q68EM7 881 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SLC26A9Q7LBE3 791 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CCDC106Q9BWC9 280 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 OSBPL1AQ9BXW6 950 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PPARGC1AQ9UBK2 798 aaKnown RBP16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MARCOQ9UEW3 520 aaPredicted RBP16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TUBGCP4Q9UGJ1 667 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PLA2G4CQ9UP65 541 aa16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 HBS1LQ9Y450 684 aaKnown RBP16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZNF638Q14966 1978 aaKnown RBP16.58■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MYO18AQ92614 2054 aaKnown RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 COL1A2P08123 1366 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 A6NJR5 290 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ASB14A6NK59 587 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 NVLO15381 856 aaKnown RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MAGEC1O60732 1142 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ALDH1A2O94788 518 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ENO1P06733 434 aaKnown RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 AMPD1P23109 780 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SESN3P58005 492 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZNF792Q3KQV3 632 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MARCH8Q5T0T0 291 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SNX30Q5VWJ9 437 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZCCHC23Q6ZST2 131 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DRAXINQ8NBI3 349 aaPredicted RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SHCBP1Q8NEM2 672 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 GTF3C2Q8WUA4 911 aaPredicted RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PPP1R13LQ8WUF5 828 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DEPDC1BQ8WUY9 529 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SPDL1Q96EA4 605 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MAML3Q96JK9 1138 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LBHD1Q9BQE6 289 aaPredicted RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 WWP1Q9H0M0 922 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SNTG2Q9NY99 539 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZFATQ9P243 1243 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SLC17A6Q9P2U8 582 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 GJD2Q9UKL4 321 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 EMCNQ9ULC0 261 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 NPTXRO95502 500 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 RPL34P49207 117 aaKnown RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SLC34A1Q06495 639 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CAPRIN2Q6IMN6 1127 aaKnown RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DENND5BQ6ZUT9 1274 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TMPRSS6Q8IU80 811 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CRLF3Q8IUI8 442 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PYROXD2Q8N2H3 581 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 RBM15BQ8NDT2 890 aaKnown RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 C18orf25Q96B23 403 aaPredicted RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 FAM136AQ96C01 138 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 OLFM3Q96PB7 478 aa16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.57■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 WDR27A2RRH5 827 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 H3BRJ5 948 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CAPN9O14815 690 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ADCY6O43306 1168 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 LINGO3P0C6S8 592 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 HOXA11P31270 313 aaPredicted RBP16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 NIPAL4Q0D2K0 466 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 STX3Q13277 289 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CCDC6Q16204 474 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 TSNAXIP1Q2TAA8 658 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MDH1BQ5I0G3 518 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MORN1Q5T089 497 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 HEATR6Q6AI08 1181 aaKnown RBP16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 MARK2Q7KZI7 788 aaKnown RBP16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ARCQ7LC44 396 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 C7orf31Q8N865 590 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 OR6B3Q8NGW1 331 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PPTC7Q8NI37 304 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 ZNF778Q96MU6 729 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 EBF4Q9BQW3 602 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 PLEKHA5Q9HAU0 1116 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 STX18Q9P2W9 335 aaKnown RBP16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 DERAQ9Y315 318 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 THSD7BQ9C0I4 1608 aa16.56■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 F5H423 210 aaPredicted RBP16.55■□□□□ 0.24
MSH5-SAPCD1-208ENST00000498473 CCDC130P13994 396 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms