RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CSPG4P5Q96PW8 444 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 EPC1Q9H2F5 836 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 PABPC3Q9H361 631 aaKnown RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 GMIPQ9P107 970 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 DNAJB4Q9UDY4 337 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 TLR5O60602 858 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 OR4Q2P0C623 313 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 PFKLP17858 780 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 TUBP50607 506 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 TAF10Q12962 218 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 UAP1Q16222 522 aaPredicted RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 KCTD15Q96SI1 283 aaPredicted RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 CYTH4Q9UIA0 394 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 SIP14410 1827 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 SLC9A3R1O14745 358 aaPredicted RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 RNF40O75150 1001 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 LUC7L3O95232 432 aaKnown RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 HMBSP08397 361 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 AMPD1P23109 780 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 WDR5P61964 334 aaKnown RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 MRPS25P82663 173 aaKnown RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 ZNF33AQ06730 810 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 RAB41Q5JT25 222 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 PM20D1Q6GTS8 502 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 NUDT18Q6ZVK8 323 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 TAC4Q86UU9 113 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 ZCCHC9Q8N567 271 aaKnown RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 EFHBQ8N7U6 833 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 ART4Q93070 314 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 IFT43Q96FT9 208 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 KCNK9Q9NPC2 374 aa8.63□□□□□ -1.03
USP54-215ENST00000497106 PPANQ9NQ55 473 aaKnown RBP8.63□□□□□ -1.03
USP54-215ENST00000497106 A0A0A0MRY4 1105 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 YJEFN3A6XGL0 299 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 E7ENQ6 273 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 DGKIO75912 1065 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 AGTP01019 485 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 ACRP10323 421 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 ALDH3A1P30838 453 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 NNMTP40261 264 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 MAGEA4P43358 317 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 DSG1Q02413 1049 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 RAD51Q06609 339 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 SCAPQ12770 1279 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 PARP6Q2NL67 630 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 ZC3H12AQ5D1E8 599 aaKnown RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 GSPT2Q8IYD1 628 aaKnown RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 ZBED8Q8IZ13 594 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 SLC39A11Q8N1S5 342 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 GSTCDQ8NEC7 633 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 OR10T2Q8NGX3 314 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 CENPIQ92674 756 aaPredicted RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.62□□□□□ -1.03
USP54-215ENST00000497106 SPATA13Q96N96 652 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 QKIQ96PU8 341 aaKnown RBP eCLIP8.62□□□□□ -1.03
USP54-215ENST00000497106 KCNK16Q96T55 309 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 CYTH2Q99418 400 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 TMEM121Q9BTD3 319 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 YIPF1Q9Y548 306 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 KRT37O76014 449 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 RHOQP17081 205 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 MAPKAPK2P49137 400 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 CXCR3P49682 368 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 KPNA2P52292 529 aaKnown RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 HDAC4P56524 1084 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 OGDHQ02218 1023 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 MBTPS1Q14703 1052 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 ATP13A4Q4VNC1 1196 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 DCAF12L1Q5VU92 463 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 RNF219Q5W0B1 726 aaPredicted RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 RTN4RL1Q86UN2 441 aaPredicted RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 LRRN4CLQ8ND94 238 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 SMC6Q96SB8 1091 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 TTC1Q99614 292 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 FAM107BQ9H098 131 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 LRRC40Q9H9A6 602 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 SLC27A5Q9Y2P5 690 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 MGAMO43451 1857 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 F8W8V4 182 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 RAMP2O60895 175 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 PPFIA2O75334 1257 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 KRT38O76015 456 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 TTC4O95801 387 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 CKMP06732 381 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 PPARGP37231 505 aaPredicted RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 AVPR1AP37288 418 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 RPL21P46778 160 aaKnown RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 SERPINB9P50453 376 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 LRRC26Q2I0M4 334 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 MSANTD2Q6P1R3 559 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 PPHLN1Q8NEY8 458 aaKnown RBP8.62□□□□□ -1.03
USP54-215ENST00000497106 MID2Q9UJV3 735 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 LZTS1Q9Y250 596 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 ZSWIM8A7E2V4 1837 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 RHOCP08134 193 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 CES1P23141 567 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 RAB33AQ14088 237 aa8.62□□□□□ -1.03
USP54-215ENST00000497106 CCDC38Q502W7 563 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms