RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 MAMLD1Q13495 774 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 DNAJC24Q6P3W2 148 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 MAATS1Q7Z4T9 603 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 CCDC26Q8TAB7 109 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 ADAM32Q8TC27 787 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 SEC14L1Q92503 715 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 KLF16Q9BXK1 252 aaPredicted RBP20.1■□□□□ 0.81
CCM2-216ENST00000488727 ADAM33Q9BZ11 813 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 PLA2G2FQ9BZM2 168 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 SMOC2Q9H3U7 446 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 CNOT8Q9UFF9 292 aaKnown RBP20.1■□□□□ 0.81
CCM2-216ENST00000488727 ESYT3A0FGR9 886 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 SIGLEC16A6NMB1 481 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 GOLGA8KD6RF30 607 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 MSI1O43347 362 aaKnown RBP20.1■□□□□ 0.81
CCM2-216ENST00000488727 ASGR2P07307 311 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 KRT3P12035 628 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 RFC1P35251 1148 aaPredicted RBP20.1■□□□□ 0.81
CCM2-216ENST00000488727 MATKP42679 507 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 RPL7AP62424 266 aaKnown RBP20.1■□□□□ 0.81
CCM2-216ENST00000488727 TJAP1Q5JTD0 557 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 MTSS1LQ765P7 747 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 ARCQ7LC44 396 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 TAC4Q86UU9 113 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 CELF5Q8N6W0 485 aaKnown RBP20.1■□□□□ 0.81
CCM2-216ENST00000488727 UBL4BQ8N7F7 174 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 SH3RF2Q8TEC5 729 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 IFT81Q8WYA0 676 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 WBP2Q969T9 261 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 TRIM11Q96F44 468 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 FAM204AQ9H8W3 233 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 KCNK12Q9HB15 430 aa20.1■□□□□ 0.81
CCM2-216ENST00000488727 HEPACAM2A8MVW5 462 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 FGGP02679 453 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 MYBL1P10243 752 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 TFE3P19532 575 aaPredicted RBP20.09■□□□□ 0.81
CCM2-216ENST00000488727 NOS2P35228 1153 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 USP4Q13107 963 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 ZNF77Q15935 545 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 OTUD1Q5VV17 481 aaPredicted RBP20.09■□□□□ 0.81
CCM2-216ENST00000488727 VITQ6UXI7 678 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 TTC16Q8NEE8 873 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 CD101Q93033 1021 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 ELSPBP1Q96BH3 223 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 NECAB3Q96P71 396 aaPredicted RBP20.09■□□□□ 0.81
CCM2-216ENST00000488727 MCEEQ96PE7 176 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 DDX47Q9H0S4 455 aaKnown RBP20.09■□□□□ 0.81
CCM2-216ENST00000488727 KIF9Q9HAQ2 790 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 PARVAQ9NVD7 372 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.09■□□□□ 0.819e-7■■■■□ 19.3
CCM2-216ENST00000488727 CALCOCO1Q9P1Z2 691 aa20.09■□□□□ 0.81
CCM2-216ENST00000488727 LEFTY2O00292 366 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 ECI2O75521 394 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 IGLV3-25P01717 112 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 FAM153BP0C7A2 387 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 CTNNA2P26232 953 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 ECHS1P30084 290 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 HSPA9P38646 679 aaKnown RBP20.08■□□□□ 0.81
CCM2-216ENST00000488727 FAM153CQ494X1 144 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 GOLGA6L1Q8N7Z2 621 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 ZNF564Q8TBZ8 553 aaPredicted RBP20.08■□□□□ 0.81
CCM2-216ENST00000488727 ALG3Q92685 438 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 NT5C3BQ969T7 300 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 CFAP57Q96MR6 1250 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 NPY6RQ99463 290 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 DDX23Q9BUQ8 820 aaKnown RBP20.08■□□□□ 0.81
CCM2-216ENST00000488727 CD320Q9NPF0 282 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.08■□□□□ 0.817e-6■□□□□ 10.1
CCM2-216ENST00000488727 OBP2AQ9NY56 170 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 FAM153AQ9UHL3 310 aa20.08■□□□□ 0.81
CCM2-216ENST00000488727 GOLGA6L10A0A0M3HER8 536 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 SLC12A8A0AV02 714 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 C2CD4BA6NLJ0 364 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 DPYSL4O14531 572 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 TRUB2O95900 331 aaKnown RBP20.07■□□□□ 0.8
CCM2-216ENST00000488727 IRF1P10914 325 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 TCF3P15923 654 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 NUP85Q9BW27 656 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 CFAP97Q9P2B7 532 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 SCAMP3O14828 347 aaKnown RBP20.07■□□□□ 0.8
CCM2-216ENST00000488727 GREM1O60565 184 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 STC2O76061 302 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 HMBSP08397 361 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 LMAN1P49257 510 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 PEX5P50542 639 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 OGDHQ02218 1023 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 EIF4EBP2Q13542 120 aaPredicted RBP20.07■□□□□ 0.8
CCM2-216ENST00000488727 IQCKQ8N0W5 287 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 BPIFB1Q8TDL5 484 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 RXFP2Q8WXD0 754 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 E2F7Q96AV8 911 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 SERPINB11Q96P15 392 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 RUFY1Q96T51 708 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 TBCBQ99426 244 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 TRIM7Q9C029 511 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 IGSF9Q9P2J2 1179 aa20.07■□□□□ 0.8
CCM2-216ENST00000488727 CCDC66A2RUB6 948 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 IRAK2O43187 625 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 PDGFRAP16234 1089 aa20.06■□□□□ 0.8
CCM2-216ENST00000488727 COMTP21964 271 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms