RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 CD163L1Q9NR16 1453 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 CGNL1Q0VF96 1302 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 CPSF1Q10570 1443 aaKnown RBP4.5□□□□□ -1.69
PTCD3-216ENST00000487043 ANKARQ7Z5J8 1434 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 NSD3Q9BZ95 1437 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 ADGRL3Q9HAR2 1447 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 TRGV11A0A075B6L2 103 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 ZAR1LA6NP61 321 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 B4E171 279 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 STX16-NPEPL1H3BU86 382 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 EXOC5O00471 708 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 STX16O14662 325 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 FYB1O15117 783 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 TRIM24O15164 1050 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 FZD7O75084 574 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 RNASEH2AO75792 299 aaKnown RBP4.5□□□□□ -1.69
PTCD3-216ENST00000487043 NCR1O76036 304 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 BAIAP3O94812 1187 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 WDR47O94967 919 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 HNRNPA1P09651 372 aaKnown RBP eCLIP4.5□□□□□ -1.69
PTCD3-216ENST00000487043 TSPAN7P41732 249 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 GSTM5P46439 218 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 TIRAPP58753 221 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 VAMP2P63027 116 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 FAM189BP81408 668 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 RESTQ13127 1097 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 EIF2B5Q13144 721 aaKnown RBP4.5□□□□□ -1.69
PTCD3-216ENST00000487043 RRP1BQ14684 758 aaKnown RBP4.5□□□□□ -1.69
PTCD3-216ENST00000487043 ICAM4Q14773 271 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 ANKRD1Q15327 319 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 SMAD1Q15797 465 aaKnown RBP4.5□□□□□ -1.69
PTCD3-216ENST00000487043 ZNF569Q5MCW4 686 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 MAP3K21Q5TCX8 1036 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 Q8N1X5 172 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 SLC22A17Q8WUG5 538 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 UCMAQ8WVF2 138 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 REEP2Q9BRK0 252 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 KLC2Q9H0B6 622 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 OSBPL5Q9H0X9 879 aaPredicted RBP4.5□□□□□ -1.69
PTCD3-216ENST00000487043 PREBQ9HCU5 417 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 BLOC1S4Q9NUP1 217 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 LIN7CQ9NUP9 197 aaKnown RBP4.5□□□□□ -1.69
PTCD3-216ENST00000487043 INTS13Q9NVM9 706 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 NFU1Q9UMS0 254 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 DNAJC16Q9Y2G8 782 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 A0A1W2PP64 1363 aa4.5□□□□□ -1.69
PTCD3-216ENST00000487043 ACEP12821 1306 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CCDC196A0A1B0GTZ2 297 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 FAM90A20PA6NIJ5 464 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 GRXCR1A8MXD5 290 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 RNASET2O00584 256 aaKnown RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 FAM20BO75063 409 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CBFA2T3O75081 653 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 ZNF623O75123 536 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 LARGE1O95461 756 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 TFRCP02786 760 aaKnown RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 HSP90AA1P07900 732 aaKnown RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 TMEM225BP0DP42 221 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CPA1P15085 419 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CD19P15391 556 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 PPP3CBP16298 524 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 PPP2R1AP30153 589 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 ACVRL1P37023 503 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 VAV2P52735 878 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 EIF4A1P60842 406 aaKnown RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 IRX6P78412 446 aaPredicted RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 RNASELQ05823 741 aaKnown RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 BFSP2Q13515 415 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CLCA4Q14CN2 919 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 ACOX1Q15067 660 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CTXN3Q4LDR2 81 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CCDC184Q52MB2 194 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 GPATCH4Q5T3I0 446 aaKnown RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 SLC9C2Q5TAH2 1124 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CCDC30Q5VVM6 783 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 ATG16L1Q676U5 607 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 MZT2BQ6NZ67 158 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 ZNF585AQ6P3V2 769 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CFAP161Q6P656 301 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CRIP3Q6Q6R5 217 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 C4orf50Q6ZRC1 276 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 PIK3AP1Q6ZUJ8 805 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 BBS12Q6ZW61 710 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 KRT27Q7Z3Y8 459 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CAND1Q86VP6 1230 aaKnown RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 PALM2Q8IXS6 379 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 B3GALNT2Q8NCR0 500 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 SUPT20HQ8NEM7 779 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 Q8TCH9 128 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 ST8SIA4Q92187 359 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 STAMQ92783 540 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 GLG1Q92896 1179 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 ZUFSPQ96AP4 578 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 REXO5Q96IC2 774 aaKnown RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 BOD1Q96IK1 185 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 DPCDQ9BVM2 203 aaPredicted RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 PAIP1Q9H074 479 aaKnown RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 RMI1Q9H9A7 625 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 GLOD4Q9HC38 313 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 GALNT9Q9HCQ5 603 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms