RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 COPG1Q9Y678 874 aaKnown RBP16.83■□□□□ 0.28
COL7A1-210ENST00000487017 TISP43B9A030 160 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 MT-CO1P00395 513 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 ME2P23368 584 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 CNTN1Q12860 1018 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 TRAF7Q6Q0C0 670 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 CASP10Q92851 521 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 KAT5Q92993 513 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 ART4Q93070 314 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 UBXN6Q9BZV1 441 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 PIH1D1Q9NWS0 290 aaKnown RBP16.82■□□□□ 0.28
COL7A1-210ENST00000487017 ERI2A8K979 691 aaKnown RBP16.82■□□□□ 0.28
COL7A1-210ENST00000487017 FAM83AQ86UY5 434 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 HAS1Q92839 578 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 CSDE1O75534 798 aaKnown RBP16.82■□□□□ 0.28
COL7A1-210ENST00000487017 SNUPNO95149 360 aaKnown RBP16.82■□□□□ 0.28
COL7A1-210ENST00000487017 ZNF682O95780 498 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 MMP14P50281 582 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 YWHAZP63104 245 aaKnown RBP16.82■□□□□ 0.28
COL7A1-210ENST00000487017 AMPD2Q01433 879 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 OSCP1Q8WVF1 389 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 RNPEPL1Q9HAU8 725 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 DDX43Q9NXZ2 648 aaKnown RBP16.82■□□□□ 0.28
COL7A1-210ENST00000487017 NUDT17P0C025 328 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 RBL1P28749 1068 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 RRM2P31350 389 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 HNRNPH3P31942 346 aaKnown RBP16.82■□□□□ 0.28
COL7A1-210ENST00000487017 SKIV2L2P42285 1042 aaKnown RBP16.82■□□□□ 0.28
COL7A1-210ENST00000487017 ILF2Q12905 390 aaKnown RBP16.82■□□□□ 0.28
COL7A1-210ENST00000487017 MAMLD1Q13495 774 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 TP53BP2Q13625 1128 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 KCNT2Q6UVM3 1135 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 ILDR2Q71H61 639 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 SNX32Q86XE0 403 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 TADA1Q96BN2 335 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 MPP4Q96JB8 637 aa16.82■□□□□ 0.28
COL7A1-210ENST00000487017 ACKR2O00590 384 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 RGS5O15539 181 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 UNC5CO95185 931 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 HMGCRP04035 888 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 ALOX15P16050 662 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-210ENST00000487017 NUMBP49757 651 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 DRG2P55039 364 aaKnown RBP16.81■□□□□ 0.28
COL7A1-210ENST00000487017 LY6KQ17RY6 165 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 FAM120BQ96EK7 910 aaKnown RBP16.81■□□□□ 0.28
COL7A1-210ENST00000487017 LRRC19Q9H756 370 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 CHADO15335 359 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 DCXO43602 365 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 ABHD2P08910 425 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 CHI3L1P36222 383 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-210ENST00000487017 NCALDP61601 193 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.81■□□□□ 0.28
COL7A1-210ENST00000487017 MARC1Q5VT66 337 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 SCUBE3Q8IX30 993 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 SYT15Q9BQS2 421 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 NDUFAF1Q9Y375 327 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 INSRRP14616 1297 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 CCR1P32246 355 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 CCT8P50990 548 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 CDH8P55286 799 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 CCDC15Q0P6D6 951 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 FAM98BQ52LJ0 330 aaKnown RBP16.81■□□□□ 0.28
COL7A1-210ENST00000487017 ZBTB45Q96K62 511 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-210ENST00000487017 ADGRE3Q9BY15 652 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 ETNK2Q9NVF9 386 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 USP20Q9Y2K6 914 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 TMEM131LA2VDJ0 1609 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 SLC12A8A0AV02 714 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 MRASO14807 208 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 NR6A1Q15406 480 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 CEP78Q5JTW2 689 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 RABGEF1Q9UJ41 708 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 LACTBL1A8MY62 500 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 LIASO43766 372 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 EGFRP00533 1210 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 DUPD1Q68J44 220 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 CES3Q6UWW8 571 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 CDRT15Q96T59 188 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 NMRAL1Q9HBL8 299 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 GAKO14976 1311 aa16.81■□□□□ 0.28
COL7A1-210ENST00000487017 SNTNA6NMZ2 147 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 VAC14Q08AM6 782 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 SCARA3Q6AZY7 606 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 AGAP11Q8TF27 550 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 NSMCE2Q96MF7 247 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 OSMRQ99650 979 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 BDH2Q9BUT1 245 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 PIF1Q9H611 641 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 CYP3A7-CYP3A51PA0A087WV96 503 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 RASSF9O75901 435 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 CPSF4O95639 269 aaKnown RBP16.8■□□□□ 0.28
COL7A1-210ENST00000487017 PROCP04070 461 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 RHOCP08134 193 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 ETS1P14921 441 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 CYP3A7P24462 503 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 CCNG1P51959 295 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 OAZ1P54368 228 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 XRCC4Q13426 336 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 LRRC38Q5VT99 294 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 FAM71AQ8IYT1 594 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms