RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 LRRC8CQ8TDW0 803 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 EBNA1BP2Q99848 306 aaKnown RBP13.42□□□□□ -0.26
SEC13-216ENST00000479868 PRDM12Q9H4Q4 367 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 CSNK1G1Q9HCP0 422 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 TMLHEQ9NVH6 421 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 F8W810 466 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 UGT1A9O60656 530 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 SF3B1O75533 1304 aaKnown RBP eCLIP13.42□□□□□ -0.264e-7■■■■■ 40.1
SEC13-216ENST00000479868 ITGB1P05556 798 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 PRKAR2AP13861 404 aaKnown RBP13.42□□□□□ -0.26
SEC13-216ENST00000479868 BDNFP23560 247 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 GLUD2P49448 558 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 RAB27AP51159 221 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 SEMA3BQ13214 749 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 PAFAH1B3Q15102 231 aaKnown RBP13.42□□□□□ -0.26
SEC13-216ENST00000479868 ZNF276Q8N554 614 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 NTAN1Q96AB6 310 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 ALKBH8Q96BT7 664 aaKnown RBP13.42□□□□□ -0.26
SEC13-216ENST00000479868 GRAMD1AQ96CP6 724 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 TMEM209Q96SK2 561 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 SLC9A7Q96T83 725 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 UGT1A7Q9HAW7 530 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 UGT1A10Q9HAW8 530 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 UGT1A8Q9HAW9 530 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 PRDM16Q9HAZ2 1276 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 DDIT4Q9NX09 232 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 SEPT10Q9P0V9 454 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 FBXW11Q9UKB1 542 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 STARD13Q9Y3M8 1113 aa13.42□□□□□ -0.26
SEC13-216ENST00000479868 NUP205Q92621 2012 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 WDR91A4D1P6 747 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 TMEM88BA6NKF7 163 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 TRDMT1O14717 391 aaKnown RBP13.41□□□□□ -0.26
SEC13-216ENST00000479868 TM9SF1O15321 606 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 EDF1O60869 148 aaKnown RBP13.41□□□□□ -0.26
SEC13-216ENST00000479868 PYGBP11216 843 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 ERCC2P18074 760 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 WASHC5Q12768 1159 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 SCAPQ12770 1279 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 FAM171BQ6P995 826 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 FITM2Q8N6M3 262 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 PDCD7Q8N8D1 485 aaKnown RBP13.41□□□□□ -0.26
SEC13-216ENST00000479868 ZNF75CPQ92670 426 aaPredicted RBP13.41□□□□□ -0.26
SEC13-216ENST00000479868 ACBD6Q9BR61 282 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 XAB2Q9HCS7 855 aaKnown RBP13.41□□□□□ -0.26
SEC13-216ENST00000479868 HAUS2Q9NVX0 235 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 PIH1D1Q9NWS0 290 aaKnown RBP13.41□□□□□ -0.26
SEC13-216ENST00000479868 KLHL14Q9P2G3 628 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 CASP8AP2Q9UKL3 1982 aa13.41□□□□□ -0.26
SEC13-216ENST00000479868 TRIM49D1C9J1S8 452 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 HGSO14964 777 aaPredicted RBP13.4□□□□□ -0.26
SEC13-216ENST00000479868 LPXNO60711 386 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 RPLP2P05387 115 aaKnown RBP13.4□□□□□ -0.26
SEC13-216ENST00000479868 CSH1P0DML2 217 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 CSH2P0DML3 217 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 FDFT1P37268 417 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 CRADDP78560 199 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 SLC18A2Q05940 514 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 PDK1Q15118 436 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 SEPT7Q16181 437 aaKnown RBP13.4□□□□□ -0.26
SEC13-216ENST00000479868 INTS6LQ5JSJ4 861 aaKnown RBP13.4□□□□□ -0.26
SEC13-216ENST00000479868 TTC39BQ5VTQ0 682 aaPredicted RBP13.4□□□□□ -0.26
SEC13-216ENST00000479868 LRRTM3Q86VH5 581 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 ECHDC2Q86YB7 292 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 OR10T2Q8NGX3 314 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 GSDMBQ8TAX9 411 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 PGAP3Q96FM1 320 aaPredicted RBP13.4□□□□□ -0.26
SEC13-216ENST00000479868 COLEC11Q9BWP8 271 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 SLC40A1Q9NP59 571 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 PTPRDP23468 1912 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 OPHN1O60890 802 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 RASSF9O75901 435 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 DNAJC8O75937 253 aaPredicted RBP13.4□□□□□ -0.26
SEC13-216ENST00000479868 CYP11A1P05108 521 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 GSTA1P08263 222 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 YY1P25490 414 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 PSMB4P28070 264 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 NEK3P51956 506 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 AIF1P55008 147 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 GRIK3Q13003 919 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 TUSC3Q13454 348 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 TRIM71Q2Q1W2 868 aaKnown RBP13.4□□□□□ -0.26
SEC13-216ENST00000479868 GALNTL6Q49A17 601 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 ZNF567Q8N184 647 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 ANKLE1Q8NAG6 615 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 APOPT1Q96IL0 206 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 PKMYT1Q99640 499 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 ALG13Q9NP73 1137 aaKnown RBP13.4□□□□□ -0.26
SEC13-216ENST00000479868 ZNF180Q9UJW8 692 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 PCDHA11Q9Y5I1 949 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 SNX10Q9Y5X0 201 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 NLRC5Q86WI3 1866 aa13.4□□□□□ -0.26
SEC13-216ENST00000479868 WDR27A2RRH5 827 aa13.39□□□□□ -0.27
SEC13-216ENST00000479868 M0QZQ0 153 aa13.39□□□□□ -0.27
SEC13-216ENST00000479868 KCNK1O00180 336 aa13.39□□□□□ -0.27
SEC13-216ENST00000479868 PPP1R12AO14974 1030 aaPredicted RBP13.39□□□□□ -0.27
SEC13-216ENST00000479868 STK10O94804 968 aaKnown RBP13.39□□□□□ -0.27
SEC13-216ENST00000479868 GSTA2P09210 222 aa13.39□□□□□ -0.27
SEC13-216ENST00000479868 CST5P28325 142 aaPredicted RBP13.39□□□□□ -0.27
SEC13-216ENST00000479868 ETV4P43268 484 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms