RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-210	ENST00000479080	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
CHD3-210	ENST00000479080	CFAP97	Q9P2B7	532 aa		13.58	□□□□□ -0.24
CHD3-210	ENST00000479080	AGO1	Q9UL18	857 aa	Known RBP	13.58	□□□□□ -0.24
CHD3-210	ENST00000479080	MFHAS1	Q9Y4C4	1052 aa		13.58	□□□□□ -0.24
CHD3-210	ENST00000479080	NUP210	Q8TEM1	1887 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	COL4A3	Q01955	1670 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	hCG_1818297	A0A087WSY0	165 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	LRRD1	A4D1F6	860 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	CTAGE9	A4FU28	777 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	KIF2A	O00139	706 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	MBTPS2	O43462	519 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	ACSL4	O60488	711 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	KRT7	P08729	469 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	KCNA5	P22460	613 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	HOXC13	P31276	330 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	VIPR2	P41587	438 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	CDH6	P55285	790 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	COG7	P83436	770 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	SIX1	Q15475	284 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	ATAT1	Q5SQI0	421 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	RAP1GAP2	Q684P5	730 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	PSTK	Q8IV42	348 aa	Known RBP	13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	DENND1C	Q8IV53	801 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	FAM217A	Q8IXS0	508 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	RASGEF1C	Q8N431	466 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	PQLC3	Q8N755	202 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	EXD1	Q8NHP7	514 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	PPM1E	Q8WY54	764 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	MS4A14	Q96JA4	679 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	HAPLN3	Q96S86	360 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	NACA2	Q9H009	215 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	OSBPL2	Q9H1P3	480 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	CARD9	Q9H257	536 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	PRDM6	Q9NQX0	595 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	ETNK2	Q9NVF9	386 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	DDX56	Q9NY93	547 aa	Known RBP	13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	CWC15	Q9P013	229 aa	Known RBP	13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	STOML2	Q9UJZ1	356 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	CDH7	Q9ULB5	785 aa		13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	KIF26A	Q9ULI4	1882 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD3-210	ENST00000479080	BRWD1	Q9NSI6	2320 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	DOCK8	Q8NF50	2099 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	LRIG2	O94898	1065 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	KRT10	P13645	584 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	PRLR	P16471	622 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	GOT1	P17174	413 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	PTPN7	P35236	360 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	MTHFR	P42898	656 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	KPNA1	P52294	538 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	AIF1	P55008	147 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	MLLT6	P55198	1093 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	NRG1	Q02297	640 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	DPYS	Q14117	519 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	EFHC2	Q5JST6	749 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	NUGGC	Q68CJ6	796 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	CES5A	Q6NT32	575 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	RFWD3	Q6PCD5	774 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	HTR3D	Q70Z44	454 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	SND1	Q7KZF4	910 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	CREG2	Q8IUH2	290 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	BBS7	Q8IWZ6	715 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	UBL4B	Q8N7F7	174 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	PCDH19	Q8TAB3	1148 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	ZNF592	Q92610	1267 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	RNF34	Q969K3	372 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	IGSF8	Q969P0	613 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	ASIC4	Q96FT7	647 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	BTN2A3P	Q96KV6	586 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	RIPOR3	Q96MK2	946 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	CSPG4P5	Q96PW8	444 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	PLA2G2F	Q9BZM2	168 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	SLITRK6	Q9H5Y7	841 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	TRPV4	Q9HBA0	871 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	TDP1	Q9NUW8	608 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	ZNF212	Q9UDV6	495 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	NR2E1	Q9Y466	385 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	C5orf42	Q9H799	3197 aa		13.56	□□□□□ -0.24
CHD3-210	ENST00000479080	IGLV3-10	A0A075B6K4	115 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	DLL1	O00548	723 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	TRDMT1	O14717	391 aa	Known RBP	13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	CNTN5	O94779	1100 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	APOE	P02649	317 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	TUBB4A	P04350	444 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	DES	P17661	470 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	TACR2	P21452	398 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	AVPR1A	P37288	418 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	VCP	P55072	806 aa	Known RBP	13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	KLF1	Q13351	362 aa	Predicted RBP	13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	SMAD4	Q13485	552 aa	Known RBP	13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	AUH	Q13825	339 aa	Known RBP	13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	PPP2R5E	Q16537	467 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	C5orf22	Q49AR2	442 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	PPP6R3	Q5H9R7	873 aa	Predicted RBP	13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	TANGO2	Q6ICL3	276 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	FBXL22	Q6P050	247 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	CIR1	Q86X95	450 aa	Predicted RBP	13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	ATP6V0D2	Q8N8Y2	350 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	SMARCD2	Q92925	531 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	AZIN2	Q96A70	460 aa		13.55	□□□□□ -0.24
CHD3-210	ENST00000479080	ZNF670	Q9BS34	389 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms