RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 SCNM1Q9BWG6 230 aa20.58■□□□□ 0.89
COL9A3-210ENST00000472880 MIR1-1HGQ9H1L0 117 aa20.58■□□□□ 0.89
COL9A3-210ENST00000472880 ABCB8Q9NUT2 735 aa20.58■□□□□ 0.89
COL9A3-210ENST00000472880 GGA2Q9UJY4 613 aa20.58■□□□□ 0.89
COL9A3-210ENST00000472880 PLA2G4CQ9UP65 541 aa20.58■□□□□ 0.89
COL9A3-210ENST00000472880 NFE2L3Q9Y4A8 694 aa20.58■□□□□ 0.89
COL9A3-210ENST00000472880 MUC22E2RYF6 1773 aaPredicted RBP20.57■□□□□ 0.88
COL9A3-210ENST00000472880 A0A1B0GTW7 788 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 FBXO21O94952 628 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 TOP3BO95985 862 aaKnown RBP20.57■□□□□ 0.88
COL9A3-210ENST00000472880 IGLV3-19P01714 112 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 HLA-EP13747 358 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 GRIK2Q13002 908 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 DCAF12L1Q5VU92 463 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 RRAGAQ7L523 313 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 UNC45BQ8IWX7 931 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 ZCCHC9Q8N567 271 aaKnown RBP20.57■□□□□ 0.88
COL9A3-210ENST00000472880 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.57■□□□□ 0.88
COL9A3-210ENST00000472880 OR2T3Q8NH03 318 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 CYB5D2Q8WUJ1 264 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 DNASE2BQ8WZ79 361 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 HSFY1Q96LI6 401 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 NUP58Q9BVL2 599 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 ZDHHC5Q9C0B5 715 aa20.57■□□□□ 0.88
COL9A3-210ENST00000472880 CEP295Q9C0D2 2601 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 RNF225M0QZC1 329 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-210ENST00000472880 IGLV3-27P01718 113 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 PABPC1P11940 636 aaKnown RBP20.56■□□□□ 0.88
COL9A3-210ENST00000472880 RDXP35241 583 aaKnown RBP20.56■□□□□ 0.88
COL9A3-210ENST00000472880 SGSHP51688 502 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 TBX4P57082 545 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 GCNT1Q02742 428 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 SLC14A1Q13336 389 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 CAMK2GQ13555 558 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-210ENST00000472880 HNRNPDQ14103 355 aaKnown RBP20.56■□□□□ 0.88
COL9A3-210ENST00000472880 FOXR2Q6PJQ5 311 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 ARHGEF19Q8IW93 802 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 ZNF557Q8N988 423 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-210ENST00000472880 LMO3Q8TAP4 145 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 CLEC4CQ8WTT0 213 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 ZSWIM1Q9BR11 485 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 IRX2Q9BZI1 471 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-210ENST00000472880 MIS12Q9H081 205 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 LHX5Q9H2C1 402 aa20.56■□□□□ 0.88
COL9A3-210ENST00000472880 TYW5A2RUC4 315 aaKnown RBP20.55■□□□□ 0.88
COL9A3-210ENST00000472880 IRAK2O43187 625 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 HYAL3O43820 417 aaPredicted RBP20.55■□□□□ 0.88
COL9A3-210ENST00000472880 TBL1XO60907 577 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 GABBR2O75899 941 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 GNA14O95837 355 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 CALCAP01258 141 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 ATP5BP06576 529 aaKnown RBP20.55■□□□□ 0.88
COL9A3-210ENST00000472880 CD59P13987 128 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 RING1Q06587 406 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 MPP7Q5T2T1 576 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 RFWD3Q6PCD5 774 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 ADIPOR2Q86V24 386 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 FAM124AQ86V42 546 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 ZNF366Q8N895 744 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 TMEM245Q9H330 911 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 FBRSQ9HAH7 460 aa20.55■□□□□ 0.88
COL9A3-210ENST00000472880 METTL12A8MUP2 240 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 PPP1R3GB7ZBB8 358 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 BIN1O00499 593 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 SART1O43290 800 aaKnown RBP20.54■□□□□ 0.88
COL9A3-210ENST00000472880 ACSL4O60488 711 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 GJB3O75712 270 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 POLR2EP19388 210 aaKnown RBP20.54■□□□□ 0.88
COL9A3-210ENST00000472880 KCNH2Q12809 1159 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 PAK1Q13153 545 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 MORC3Q14149 939 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 FAM133BQ5BKY9 247 aaKnown RBP20.54■□□□□ 0.88
COL9A3-210ENST00000472880 PIK3R6Q5UE93 754 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 MBLAC2Q68D91 279 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 KIAA0907Q7Z7F0 614 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-210ENST00000472880 TRIM59Q8IWR1 403 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 HJURPQ8NCD3 748 aaPredicted RBP20.54■□□□□ 0.88
COL9A3-210ENST00000472880 EHBP1Q8NDI1 1231 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 SNX19Q92543 992 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 FAM149B1Q96BN6 582 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 SERPINB11Q96P15 392 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 DDX50Q9BQ39 737 aaKnown RBP20.54■□□□□ 0.88
COL9A3-210ENST00000472880 PCED1AQ9H1Q7 454 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 ST7Q9NRC1 585 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 NEUROG3Q9Y4Z2 214 aa20.54■□□□□ 0.88
COL9A3-210ENST00000472880 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.54■□□□□ 0.88
COL9A3-210ENST00000472880 GOLGA6L7A0A1B0GV03 622 aa20.53■□□□□ 0.88
COL9A3-210ENST00000472880 TMEM8BA6NDV4 472 aa20.53■□□□□ 0.88
COL9A3-210ENST00000472880 H0Y626 953 aa20.53■□□□□ 0.88
COL9A3-210ENST00000472880 BCAT2O15382 392 aaPredicted RBP20.53■□□□□ 0.88
COL9A3-210ENST00000472880 TRIM16O95361 564 aa20.53■□□□□ 0.88
COL9A3-210ENST00000472880 AFPP02771 609 aaKnown RBP20.53■□□□□ 0.88
COL9A3-210ENST00000472880 DLDP09622 509 aaKnown RBP20.53■□□□□ 0.88
COL9A3-210ENST00000472880 KRT5P13647 590 aa20.53■□□□□ 0.88
COL9A3-210ENST00000472880 BMP6P22004 513 aa20.53■□□□□ 0.88
COL9A3-210ENST00000472880 SLC6A4P31645 630 aa20.53■□□□□ 0.88
COL9A3-210ENST00000472880 CD70P32970 193 aa20.53■□□□□ 0.88
COL9A3-210ENST00000472880 STX17P56962 302 aa20.53■□□□□ 0.88
COL9A3-210ENST00000472880 PTPRNQ16849 979 aa20.53■□□□□ 0.88
COL9A3-210ENST00000472880 NAXDQ8IW45 347 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms