RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SCLYQ96I15 445 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 TSSK1BQ9BXA7 367 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 C20orf96Q9NUD7 363 aaPredicted RBP14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 SLC39A10Q9ULF5 831 aa14.16□□□□□ -0.14
CCDC88A-211ENST00000471947 ARHGAP42A6NI28 874 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 ALOX15BO15296 676 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 DIAPH2O60879 1101 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 LYPLA1O75608 230 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 SAPCD2Q86UD0 394 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 ZNF280BQ86YH2 543 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 THEM5Q8N1Q8 247 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 NKD2Q969F2 451 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 EXOC2Q96KP1 924 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 CYP2S1Q96SQ9 504 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 TXLNGYQ9BZA5 131 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 ZFP69BQ9UJL9 534 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 TNS1Q9HBL0 1735 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 ZNFX1Q9P2E3 1918 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 SPATA31D3P0C874 917 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 CTGFP29279 349 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 L1CAMP32004 1257 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 STILQ15468 1287 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 PPP1R15BQ5SWA1 713 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 C4orf50Q6ZRC1 276 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 SPATA31D4Q6ZUB0 917 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 TRPV1Q8NER1 839 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 NAT14Q8WUY8 206 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 CDKL2Q92772 493 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 FSD1LQ9BXM9 530 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 MANSC1Q9H8J5 431 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 ARHGEF4Q9NR80 690 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 HEY2Q9UBP5 337 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 FAM237BA0A1B0GVD1 139 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 PHGDHO43175 533 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 CHRNA1P02708 482 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 MATKP42679 507 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 YWHAHQ04917 246 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 KYAT1Q16773 422 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 CFAP52Q8N1V2 620 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 PPP4R1Q8TF05 950 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 ZNF75CPQ92670 426 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 DUSP16Q9BY84 665 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 RNF186Q9NXI6 227 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 RABGEF1Q9UJ41 708 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 KIAA1257Q9ULG3 409 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 CNTN6Q9UQ52 1028 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 ARL2BPQ9Y2Y0 163 aa14.15□□□□□ -0.14
CCDC88A-211ENST00000471947 GOLGA8QA0A0J9YX86 632 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 GOLGA8OA6NCC3 632 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 GOLGA8NF8WBI6 632 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 MGEA5O60502 916 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 ARFIP2P53365 341 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 PDK2Q15119 407 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 C10orf120Q5SQS8 335 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 KIAA0319Q5VV43 1072 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 UBR7Q8N806 425 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 RFWD2Q8NHY2 731 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 MFSD3Q96ES6 412 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 SRPK1Q96SB4 655 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 POPDC2Q9HBU9 364 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 STARD7Q9NQZ5 370 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 IARS2Q9NSE4 1012 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 TMEM30AQ9NV96 361 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 BFARQ9NZS9 450 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 GPR182O15218 404 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 BAG2O95816 211 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 CSH1P0DML2 217 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 CSH2P0DML3 217 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 TAC1P20366 129 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 ITGA7Q13683 1181 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 UNC5AQ6ZN44 842 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 AGMOQ6ZNB7 445 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 ARHGAP36Q6ZRI8 547 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 CEP128Q6ZU80 1094 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 LDB1Q86U70 411 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 FITM2Q8N6M3 262 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 TTC9BQ8N6N2 239 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 POU5F2Q8N7G0 328 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 TSNARE1Q96NA8 513 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 SYBUQ9NX95 663 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 MORF4L1Q9UBU8 362 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 GNEQ9Y223 722 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 DRG1Q9Y295 367 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 KRT38O76015 456 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 NFKB1P19838 968 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 PCSK1P29120 753 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 PNPLA4P41247 253 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 TAF2Q6P1X5 1199 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 CKAP2Q8WWK9 683 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 SMOQ99835 787 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 KATNBL1Q9H079 304 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 DNAJB4Q9UDY4 337 aa14.14□□□□□ -0.15
CCDC88A-211ENST00000471947 TGM2P21980 687 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 PLK1P53350 603 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 EPHB1P54762 984 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 TAF1BQ53T94 588 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 UBXN11Q5T124 520 aa14.13□□□□□ -0.15
CCDC88A-211ENST00000471947 NAT8LQ8N9F0 302 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms